Strain Fitness in Agrobacterium fabrum C58 around Atu4650

Experiment: Phenoxyacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phenoxyacetic 5 mM
1,802,722	+				+0.5
1,802,722	+				-0.9
1,802,730	-				-0.1
1,802,762	+				-0.1
1,802,771	-				+0.5
1,802,771	-				+0.2
1,802,812	+				+0.3
1,802,876	-				-0.1
1,802,894	+				+0.1
1,802,964	-		Atu4649	0.16	+0.2
1,803,010	-		Atu4649	0.21	+0.4
1,803,026	+		Atu4649	0.23	-0.4
1,803,033	+		Atu4649	0.23	+0.1
1,803,033	+		Atu4649	0.23	-0.4
1,803,041	-		Atu4649	0.24	-0.1
1,803,061	-		Atu4649	0.27	-0.2
1,803,108	+		Atu4649	0.32	-0.3
1,803,184	-		Atu4649	0.40	+0.1
1,803,184	-		Atu4649	0.40	-0.3
1,803,184	-		Atu4649	0.40	+0.7
1,803,194	-		Atu4649	0.41	+0.0
1,803,199	+		Atu4649	0.42	+0.0
1,803,207	-		Atu4649	0.43	-0.5
1,803,347	+		Atu4649	0.59	+0.5
1,803,361	-		Atu4649	0.60	-0.6
1,803,391	+		Atu4649	0.63	-1.3
1,803,454	+		Atu4649	0.70	-0.5
1,803,460	+		Atu4649	0.71	+1.0
1,803,512	+		Atu4649	0.77	+0.0
1,803,512	+		Atu4649	0.77	+0.2
1,803,520	-		Atu4649	0.78	+0.1
1,803,626	-		Atu4649	0.90	+0.1
1,803,681	-				-0.8
1,803,731	-				-0.1
1,803,856	+		Atu4650	0.14	+1.5
1,803,919	+		Atu4650	0.20	-0.0
1,803,972	+		Atu4650	0.25	-0.4
1,804,095	-		Atu4650	0.37	+0.7
1,804,251	+		Atu4650	0.52	-0.3
1,804,310	+		Atu4650	0.57	+0.8
1,804,358	-		Atu4650	0.62	+0.2
1,804,382	+		Atu4650	0.64	+0.2
1,804,543	-		Atu4650	0.80	-0.4
1,804,685	+				-0.5
1,804,685	+				-0.1
1,804,686	+				-0.6
1,804,692	+				-0.2
1,804,693	-				-1.4
1,804,693	-				-0.2
1,804,694	-				+0.3
1,804,694	-				+0.7
1,804,764	+				-0.0
1,804,792	+				-0.7
1,804,936	+		Atu4651	0.13	-0.1
1,805,106	-		Atu4651	0.26	-0.2
1,805,118	-		Atu4651	0.27	-0.2
1,805,185	+		Atu4651	0.31	-0.2
1,805,193	-		Atu4651	0.32	-0.6
1,805,193	-		Atu4651	0.32	+0.3
1,805,196	+		Atu4651	0.32	-0.0
1,805,196	+		Atu4651	0.32	+0.1
1,805,204	-		Atu4651	0.33	+0.4
1,805,204	-		Atu4651	0.33	+1.8
1,805,263	-		Atu4651	0.37	+0.4
1,805,334	-		Atu4651	0.42	+0.7
1,805,345	-		Atu4651	0.43	+0.1
1,805,397	-		Atu4651	0.47	+0.2
1,805,629	-		Atu4651	0.64	-0.0
1,805,647	-		Atu4651	0.65	-0.5
1,805,648	+		Atu4651	0.65	+0.7
1,805,648	+		Atu4651	0.65	+0.2