Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3204 and Atu3205 are separated by 97 nucleotides Atu3205 and Atu3206 are separated by 121 nucleotides
Atu3204: Atu3204 - diguanylate cyclase, at 216,138 to 217,715
Atu3204
Atu3205: Atu3205 - hypothetical protein, at 217,813 to 218,607
Atu3205
Atu3206: Atu3206 - hypothetical protein, at 218,729 to 219,772
Atu3206
Position (kb) 217
218
219 Strain fitness (log2 ratio) -1
0
1 at 216.946 kb on + strand, within Atu3204 at 216.964 kb on - strand, within Atu3204 at 217.072 kb on + strand, within Atu3204 at 217.103 kb on + strand, within Atu3204 at 217.143 kb on - strand, within Atu3204 at 217.236 kb on + strand, within Atu3204 at 217.302 kb on - strand, within Atu3204 at 217.505 kb on - strand, within Atu3204 at 217.529 kb on + strand, within Atu3204 at 217.539 kb on - strand, within Atu3204 at 217.571 kb on - strand at 217.627 kb on - strand at 217.793 kb on - strand at 217.844 kb on + strand at 217.849 kb on - strand at 217.852 kb on - strand at 217.874 kb on - strand at 217.935 kb on + strand, within Atu3205 at 217.935 kb on + strand, within Atu3205 at 217.935 kb on + strand, within Atu3205 at 217.938 kb on + strand, within Atu3205 at 217.943 kb on - strand, within Atu3205 at 217.948 kb on - strand, within Atu3205 at 217.983 kb on + strand, within Atu3205 at 218.030 kb on - strand, within Atu3205 at 218.051 kb on + strand, within Atu3205 at 218.224 kb on + strand, within Atu3205 at 218.325 kb on + strand, within Atu3205 at 218.470 kb on - strand, within Atu3205 at 218.499 kb on - strand, within Atu3205 at 218.499 kb on - strand, within Atu3205 at 218.508 kb on + strand, within Atu3205 at 218.536 kb on - strand at 218.536 kb on - strand at 218.601 kb on - strand at 218.602 kb on + strand at 218.602 kb on + strand at 218.615 kb on + strand at 218.673 kb on - strand at 218.683 kb on + strand at 218.718 kb on + strand at 218.726 kb on + strand at 218.785 kb on + strand at 218.889 kb on - strand, within Atu3206 at 218.889 kb on - strand, within Atu3206 at 218.905 kb on + strand, within Atu3206 at 218.950 kb on + strand, within Atu3206 at 218.955 kb on + strand, within Atu3206 at 218.995 kb on - strand, within Atu3206 at 218.998 kb on - strand, within Atu3206 at 219.002 kb on + strand, within Atu3206 at 219.023 kb on - strand, within Atu3206 at 219.038 kb on - strand, within Atu3206 at 219.053 kb on - strand, within Atu3206 at 219.055 kb on + strand, within Atu3206 at 219.055 kb on + strand, within Atu3206 at 219.058 kb on + strand, within Atu3206 at 219.063 kb on - strand, within Atu3206 at 219.063 kb on - strand, within Atu3206 at 219.129 kb on - strand, within Atu3206 at 219.136 kb on + strand, within Atu3206 at 219.144 kb on - strand, within Atu3206 at 219.153 kb on + strand, within Atu3206 at 219.308 kb on + strand, within Atu3206 at 219.326 kb on - strand, within Atu3206 at 219.358 kb on + strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.366 kb on - strand, within Atu3206 at 219.371 kb on - strand, within Atu3206 at 219.384 kb on - strand, within Atu3206 at 219.470 kb on - strand, within Atu3206 at 219.495 kb on + strand, within Atu3206
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 216,946 + Atu3204 0.51 -0.2 216,964 - Atu3204 0.52 -0.0 217,072 + Atu3204 0.59 +0.1 217,103 + Atu3204 0.61 -0.0 217,143 - Atu3204 0.64 +0.3 217,236 + Atu3204 0.70 -1.3 217,302 - Atu3204 0.74 +0.1 217,505 - Atu3204 0.87 +0.3 217,529 + Atu3204 0.88 -0.0 217,539 - Atu3204 0.89 +0.2 217,571 - +0.1 217,627 - +0.2 217,793 - +0.1 217,844 + -0.4 217,849 - +0.3 217,852 - -0.1 217,874 - -0.6 217,935 + Atu3205 0.15 +0.3 217,935 + Atu3205 0.15 -0.0 217,935 + Atu3205 0.15 -0.1 217,938 + Atu3205 0.16 +1.0 217,943 - Atu3205 0.16 +0.2 217,948 - Atu3205 0.17 +0.0 217,983 + Atu3205 0.21 +0.4 218,030 - Atu3205 0.27 -0.1 218,051 + Atu3205 0.30 +1.1 218,224 + Atu3205 0.52 +0.0 218,325 + Atu3205 0.64 -0.2 218,470 - Atu3205 0.83 +0.8 218,499 - Atu3205 0.86 +0.2 218,499 - Atu3205 0.86 +0.1 218,508 + Atu3205 0.87 +0.7 218,536 - -0.6 218,536 - +0.1 218,601 - -1.4 218,602 + +0.1 218,602 + -0.5 218,615 + -0.5 218,673 - -0.0 218,683 + +1.1 218,718 + +0.1 218,726 + -0.2 218,785 + -0.3 218,889 - Atu3206 0.15 +0.4 218,889 - Atu3206 0.15 -0.4 218,905 + Atu3206 0.17 +0.2 218,950 + Atu3206 0.21 +0.1 218,955 + Atu3206 0.22 -0.0 218,995 - Atu3206 0.25 +0.0 218,998 - Atu3206 0.26 +0.3 219,002 + Atu3206 0.26 -0.2 219,023 - Atu3206 0.28 -0.0 219,038 - Atu3206 0.30 -0.1 219,053 - Atu3206 0.31 -0.2 219,055 + Atu3206 0.31 +0.2 219,055 + Atu3206 0.31 -0.0 219,058 + Atu3206 0.32 +0.6 219,063 - Atu3206 0.32 +0.1 219,063 - Atu3206 0.32 -0.1 219,129 - Atu3206 0.38 -0.1 219,136 + Atu3206 0.39 -0.7 219,144 - Atu3206 0.40 -0.8 219,153 + Atu3206 0.41 -0.3 219,308 + Atu3206 0.55 +0.1 219,326 - Atu3206 0.57 +1.1 219,358 + Atu3206 0.60 -0.2 219,366 - Atu3206 0.61 -0.2 219,366 - Atu3206 0.61 +0.1 219,366 - Atu3206 0.61 +0.0 219,371 - Atu3206 0.61 -0.5 219,384 - Atu3206 0.63 -0.9 219,470 - Atu3206 0.71 -0.4 219,495 + Atu3206 0.73 +1.3
Or see this region's nucleotide sequence