Strain Fitness in Agrobacterium fabrum C58 around Atu2796

Experiment: Phenoxyacetic 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu2795 and Atu2796 overlap by 46 nucleotidesAtu2796 and Atu2797 overlap by 4 nucleotidesAtu2797 and Atu2798 overlap by 25 nucleotides Atu2795: Atu2795 - cobalamin biosynthetic protein, at 2,797,189 to 2,798,325 Atu2795 Atu2796: Atu2796 - precorrin-4 C11-methyltransferase, at 2,798,280 to 2,799,053 Atu2796 Atu2797: Atu2797 - cobalamin biosynthesis protein, at 2,799,050 to 2,799,487 Atu2797 Atu2798: Atu2798 - precorrin-6y methyltransferase, at 2,799,463 to 2,800,722 Atu2798 Position (kb) 2798 2799 2800Strain fitness (log2 ratio) -1 0 1at 2797.700 kb on + strand, within Atu2795at 2797.751 kb on + strand, within Atu2795at 2797.772 kb on + strand, within Atu2795at 2797.772 kb on + strand, within Atu2795at 2797.871 kb on - strand, within Atu2795at 2797.980 kb on + strand, within Atu2795at 2797.981 kb on + strand, within Atu2795at 2797.988 kb on - strand, within Atu2795at 2798.114 kb on + strand, within Atu2795at 2798.114 kb on + strand, within Atu2795at 2798.138 kb on + strand, within Atu2795at 2798.253 kb on - strandat 2798.272 kb on - strandat 2798.372 kb on - strand, within Atu2796at 2798.393 kb on - strand, within Atu2796at 2798.398 kb on - strand, within Atu2796at 2798.467 kb on + strand, within Atu2796at 2798.651 kb on + strand, within Atu2796at 2798.651 kb on + strand, within Atu2796at 2798.659 kb on - strand, within Atu2796at 2798.659 kb on - strand, within Atu2796at 2798.666 kb on - strand, within Atu2796at 2798.740 kb on + strand, within Atu2796at 2798.974 kb on - strand, within Atu2796at 2799.026 kb on + strandat 2799.070 kb on + strandat 2799.094 kb on - strand, within Atu2797at 2799.168 kb on + strand, within Atu2797at 2799.195 kb on + strand, within Atu2797at 2799.330 kb on - strand, within Atu2797at 2799.444 kb on - strandat 2799.471 kb on + strandat 2799.471 kb on + strandat 2799.489 kb on - strandat 2799.539 kb on + strandat 2799.673 kb on + strand, within Atu2798at 2799.810 kb on + strand, within Atu2798at 2800.048 kb on - strand, within Atu2798

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
remove
2,797,700 + Atu2795 0.45 -0.3
2,797,751 + Atu2795 0.49 -0.8
2,797,772 + Atu2795 0.51 -0.4
2,797,772 + Atu2795 0.51 -0.6
2,797,871 - Atu2795 0.60 -1.5
2,797,980 + Atu2795 0.70 -1.3
2,797,981 + Atu2795 0.70 -0.8
2,797,988 - Atu2795 0.70 +0.3
2,798,114 + Atu2795 0.81 -0.4
2,798,114 + Atu2795 0.81 -0.3
2,798,138 + Atu2795 0.83 -0.5
2,798,253 - -0.1
2,798,272 - -0.0
2,798,372 - Atu2796 0.12 -0.6
2,798,393 - Atu2796 0.15 +0.4
2,798,398 - Atu2796 0.15 -0.2
2,798,467 + Atu2796 0.24 -0.8
2,798,651 + Atu2796 0.48 -1.1
2,798,651 + Atu2796 0.48 -0.6
2,798,659 - Atu2796 0.49 +0.4
2,798,659 - Atu2796 0.49 +0.8
2,798,666 - Atu2796 0.50 -0.7
2,798,740 + Atu2796 0.59 -0.3
2,798,974 - Atu2796 0.90 -0.6
2,799,026 + -0.5
2,799,070 + +0.5
2,799,094 - Atu2797 0.10 +0.0
2,799,168 + Atu2797 0.27 -0.4
2,799,195 + Atu2797 0.33 -0.4
2,799,330 - Atu2797 0.64 -0.5
2,799,444 - -0.2
2,799,471 + +0.1
2,799,471 + -0.2
2,799,489 - -1.3
2,799,539 + +1.0
2,799,673 + Atu2798 0.17 -0.5
2,799,810 + Atu2798 0.28 +0.3
2,800,048 - Atu2798 0.46 -0.4

Or see this region's nucleotide sequence