Experiment: Phenoxyacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2525 and Atu2526 are separated by 157 nucleotides Atu2526 and Atu2527 overlap by 4 nucleotides Atu2527 and Atu2528 are separated by 12 nucleotides
Atu2525: Atu2525 - MFS permease, at 2,498,361 to 2,499,710
Atu2525
Atu2526: Atu2526 - hypothetical protein, at 2,499,868 to 2,500,206
Atu2526
Atu2527: Atu2527 - dioxygenase, at 2,500,203 to 2,501,090
Atu2527
Atu2528: Atu2528 - maleylacetate reductase, at 2,501,103 to 2,502,158
Atu2528
Position (kb)
2499
2500
2501 Strain fitness (log2 ratio)
-1
0
1 at 2498.879 kb on - strand, within Atu2525 at 2498.985 kb on + strand, within Atu2525 at 2499.001 kb on - strand, within Atu2525 at 2499.131 kb on + strand, within Atu2525 at 2499.131 kb on + strand, within Atu2525 at 2499.132 kb on + strand, within Atu2525 at 2499.201 kb on + strand, within Atu2525 at 2499.213 kb on + strand, within Atu2525 at 2499.216 kb on - strand, within Atu2525 at 2499.221 kb on - strand, within Atu2525 at 2499.225 kb on + strand, within Atu2525 at 2499.278 kb on + strand, within Atu2525 at 2499.284 kb on + strand, within Atu2525 at 2499.284 kb on + strand, within Atu2525 at 2499.373 kb on + strand, within Atu2525 at 2499.375 kb on + strand, within Atu2525 at 2499.383 kb on - strand, within Atu2525 at 2499.455 kb on + strand, within Atu2525 at 2499.456 kb on + strand, within Atu2525 at 2499.526 kb on - strand, within Atu2525 at 2499.681 kb on + strand at 2499.689 kb on - strand at 2499.707 kb on + strand at 2499.707 kb on + strand at 2499.707 kb on + strand at 2499.715 kb on - strand at 2499.715 kb on - strand at 2499.715 kb on - strand at 2499.739 kb on + strand at 2499.751 kb on + strand at 2499.931 kb on + strand, within Atu2526 at 2500.012 kb on - strand, within Atu2526 at 2500.043 kb on - strand, within Atu2526 at 2500.096 kb on + strand, within Atu2526 at 2500.101 kb on + strand, within Atu2526 at 2500.242 kb on - strand at 2500.342 kb on - strand, within Atu2527 at 2500.352 kb on - strand, within Atu2527 at 2500.431 kb on + strand, within Atu2527 at 2500.579 kb on + strand, within Atu2527 at 2500.579 kb on + strand, within Atu2527 at 2500.587 kb on - strand, within Atu2527 at 2500.624 kb on + strand, within Atu2527 at 2500.684 kb on + strand, within Atu2527 at 2500.689 kb on + strand, within Atu2527 at 2500.696 kb on + strand, within Atu2527 at 2500.768 kb on - strand, within Atu2527 at 2500.819 kb on + strand, within Atu2527 at 2500.829 kb on - strand, within Atu2527 at 2500.978 kb on + strand, within Atu2527 at 2501.096 kb on + strand at 2501.118 kb on - strand at 2501.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM remove 2,498,879 - Atu2525 0.38 -0.5 2,498,985 + Atu2525 0.46 -0.4 2,499,001 - Atu2525 0.47 -0.1 2,499,131 + Atu2525 0.57 -0.2 2,499,131 + Atu2525 0.57 +0.2 2,499,132 + Atu2525 0.57 -0.0 2,499,201 + Atu2525 0.62 +0.7 2,499,213 + Atu2525 0.63 -0.3 2,499,216 - Atu2525 0.63 +0.1 2,499,221 - Atu2525 0.64 -0.4 2,499,225 + Atu2525 0.64 -0.2 2,499,278 + Atu2525 0.68 -0.8 2,499,284 + Atu2525 0.68 -0.2 2,499,284 + Atu2525 0.68 +0.1 2,499,373 + Atu2525 0.75 -0.2 2,499,375 + Atu2525 0.75 -0.4 2,499,383 - Atu2525 0.76 -0.3 2,499,455 + Atu2525 0.81 -0.1 2,499,456 + Atu2525 0.81 +0.6 2,499,526 - Atu2525 0.86 +0.7 2,499,681 + -0.0 2,499,689 - -0.0 2,499,707 + -0.1 2,499,707 + +0.1 2,499,707 + -0.4 2,499,715 - -0.2 2,499,715 - +0.0 2,499,715 - +1.3 2,499,739 + -1.0 2,499,751 + +0.3 2,499,931 + Atu2526 0.19 -0.1 2,500,012 - Atu2526 0.42 +0.2 2,500,043 - Atu2526 0.52 +1.6 2,500,096 + Atu2526 0.67 +0.3 2,500,101 + Atu2526 0.69 -0.0 2,500,242 - -0.2 2,500,342 - Atu2527 0.16 -0.1 2,500,352 - Atu2527 0.17 -0.3 2,500,431 + Atu2527 0.26 -0.2 2,500,579 + Atu2527 0.42 -0.1 2,500,579 + Atu2527 0.42 -0.1 2,500,587 - Atu2527 0.43 -0.2 2,500,624 + Atu2527 0.47 +0.6 2,500,684 + Atu2527 0.54 -0.2 2,500,689 + Atu2527 0.55 +0.3 2,500,696 + Atu2527 0.56 +0.7 2,500,768 - Atu2527 0.64 -0.3 2,500,819 + Atu2527 0.69 +0.1 2,500,829 - Atu2527 0.70 -0.4 2,500,978 + Atu2527 0.87 -0.0 2,501,096 + -0.2 2,501,118 - +0.1 2,501,129 - -0.2
Or see this region's nucleotide sequence