Strain Fitness in Agrobacterium fabrum C58 around Atu1446

Experiment: Phenoxyacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1445 and Atu1446 overlap by 4 nucleotidesAtu1446 and Atu1447 are separated by 148 nucleotides Atu1445: Atu1445 - two component sensor kinase, at 1,438,154 to 1,439,302 Atu1445 Atu1446: Atu1446 - two component response regulator, at 1,439,299 to 1,440,750 Atu1446 Atu1447: Atu1447 - two component sensor kinase, at 1,440,899 to 1,443,160 Atu1447 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1at 1438.302 kb on + strand, within Atu1445at 1438.366 kb on + strand, within Atu1445at 1438.366 kb on + strand, within Atu1445at 1438.436 kb on + strand, within Atu1445at 1438.696 kb on + strand, within Atu1445at 1438.701 kb on + strand, within Atu1445at 1438.790 kb on + strand, within Atu1445at 1438.819 kb on + strand, within Atu1445at 1439.042 kb on + strand, within Atu1445at 1439.069 kb on - strand, within Atu1445at 1439.133 kb on + strand, within Atu1445at 1439.283 kb on + strandat 1439.347 kb on + strandat 1439.347 kb on + strandat 1439.366 kb on + strandat 1439.486 kb on + strand, within Atu1446at 1439.897 kb on - strand, within Atu1446at 1440.104 kb on + strand, within Atu1446at 1440.337 kb on + strand, within Atu1446at 1440.659 kb on - strandat 1440.734 kb on + strandat 1440.852 kb on - strandat 1440.855 kb on + strandat 1440.863 kb on - strandat 1441.684 kb on + strand, within Atu1447at 1441.684 kb on + strand, within Atu1447

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
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1,438,302 + Atu1445 0.13 -0.3
1,438,366 + Atu1445 0.18 +0.1
1,438,366 + Atu1445 0.18 +0.6
1,438,436 + Atu1445 0.25 -0.9
1,438,696 + Atu1445 0.47 -0.2
1,438,701 + Atu1445 0.48 -0.6
1,438,790 + Atu1445 0.55 -0.7
1,438,819 + Atu1445 0.58 -0.2
1,439,042 + Atu1445 0.77 +0.8
1,439,069 - Atu1445 0.80 -0.5
1,439,133 + Atu1445 0.85 +1.4
1,439,283 + -0.8
1,439,347 + -0.3
1,439,347 + -1.0
1,439,366 + -2.1
1,439,486 + Atu1446 0.13 -0.6
1,439,897 - Atu1446 0.41 -0.4
1,440,104 + Atu1446 0.55 -0.6
1,440,337 + Atu1446 0.71 -0.9
1,440,659 - -2.0
1,440,734 + +0.8
1,440,852 - -0.4
1,440,855 + -0.3
1,440,863 - -1.0
1,441,684 + Atu1447 0.35 +0.1
1,441,684 + Atu1447 0.35 -0.3

Or see this region's nucleotide sequence