Strain Fitness in Agrobacterium fabrum C58 around Atu0723

Experiment: Phenoxyacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0721 and Atu0722 are separated by 336 nucleotidesAtu0722 and Atu0723 are separated by 11 nucleotidesAtu0723 and Atu0724 are separated by 50 nucleotides Atu0721: Atu0721 - hypothetical protein, at 720,729 to 721,838 Atu0721 Atu0722: Atu0722 - hypothetical protein, at 722,175 to 722,693 Atu0722 Atu0723: Atu0723 - FAD dependent oxidoreductase, at 722,705 to 724,141 Atu0723 Atu0724: Atu0724 - hypothetical protein, at 724,192 to 725,169 Atu0724 Position (kb) 722 723 724 725Strain fitness (log2 ratio) -2 -1 0 1at 721.733 kb on - strandat 721.842 kb on - strandat 721.855 kb on - strandat 721.855 kb on - strandat 721.855 kb on - strandat 721.939 kb on - strandat 722.107 kb on + strandat 722.124 kb on - strandat 722.173 kb on - strandat 722.253 kb on + strand, within Atu0722at 722.396 kb on - strand, within Atu0722at 722.424 kb on + strand, within Atu0722at 722.539 kb on - strand, within Atu0722at 722.616 kb on - strand, within Atu0722at 722.616 kb on - strand, within Atu0722at 722.666 kb on + strandat 722.666 kb on + strandat 722.667 kb on + strandat 722.674 kb on - strandat 722.674 kb on - strandat 723.084 kb on - strand, within Atu0723at 723.122 kb on - strand, within Atu0723at 723.369 kb on - strand, within Atu0723at 723.412 kb on + strand, within Atu0723at 723.527 kb on + strand, within Atu0723at 723.734 kb on + strand, within Atu0723

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Per-strain Table

Position Strand Gene LocusTag Fraction Phenoxyacetic 5 mM
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721,733 - -0.5
721,842 - -0.3
721,855 - -0.3
721,855 - +0.3
721,855 - +0.2
721,939 - +0.2
722,107 + -0.5
722,124 - -0.7
722,173 - -0.5
722,253 + Atu0722 0.15 -0.6
722,396 - Atu0722 0.43 -0.1
722,424 + Atu0722 0.48 +0.3
722,539 - Atu0722 0.70 -0.0
722,616 - Atu0722 0.85 +0.3
722,616 - Atu0722 0.85 +0.4
722,666 + +0.6
722,666 + -0.2
722,667 + +0.0
722,674 - -0.6
722,674 - -0.5
723,084 - Atu0723 0.26 +0.3
723,122 - Atu0723 0.29 -0.6
723,369 - Atu0723 0.46 -2.1
723,412 + Atu0723 0.49 -0.6
723,527 + Atu0723 0.57 +0.9
723,734 + Atu0723 0.72 +0.3

Or see this region's nucleotide sequence