Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0967 and Atu0968 are separated by 1 nucleotides Atu0968 and Atu8142 are separated by 139 nucleotides Atu8142 and Atu0970 are separated by 93 nucleotides
Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123
Atu0967
Atu0968: Atu0968 - hypothetical protein, at 958,125 to 958,364
Atu0968
Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758
Atu8142
Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523
Atu0970
Position (kb) 958
959 Strain fitness (log2 ratio) -2
-1
0
1 at 957.133 kb on - strand, within Atu0967 at 957.145 kb on + strand, within Atu0967 at 957.166 kb on + strand, within Atu0967 at 957.344 kb on + strand, within Atu0967 at 957.464 kb on + strand, within Atu0967 at 957.488 kb on + strand, within Atu0967 at 957.645 kb on + strand, within Atu0967 at 957.726 kb on - strand, within Atu0967 at 957.804 kb on - strand at 957.843 kb on + strand at 957.851 kb on - strand at 957.863 kb on + strand at 957.870 kb on + strand at 957.896 kb on - strand at 957.944 kb on + strand at 957.952 kb on + strand at 957.969 kb on + strand at 957.980 kb on - strand at 958.002 kb on + strand at 958.072 kb on + strand at 958.163 kb on - strand, within Atu0968 at 958.163 kb on - strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.174 kb on - strand, within Atu0968 at 958.178 kb on + strand, within Atu0968 at 958.179 kb on + strand, within Atu0968 at 958.235 kb on - strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.284 kb on + strand, within Atu0968 at 958.287 kb on - strand, within Atu0968 at 958.289 kb on + strand, within Atu0968 at 958.297 kb on - strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.334 kb on - strand, within Atu0968 at 958.345 kb on - strand at 958.867 kb on + strand at 959.105 kb on - strand, within Atu0970 at 959.230 kb on - strand, within Atu0970 at 959.333 kb on - strand, within Atu0970
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 957,133 - Atu0967 0.74 -1.1 957,145 + Atu0967 0.74 -1.1 957,166 + Atu0967 0.75 +0.1 957,344 + Atu0967 0.79 -0.1 957,464 + Atu0967 0.83 +0.4 957,488 + Atu0967 0.83 +1.1 957,645 + Atu0967 0.87 -0.5 957,726 - Atu0967 0.90 -0.2 957,804 - -0.3 957,843 + -0.1 957,851 - +0.3 957,863 + -0.2 957,870 + +0.8 957,896 - +0.9 957,944 + +0.0 957,952 + +1.0 957,969 + +0.8 957,980 - +0.1 958,002 + +0.7 958,072 + -0.3 958,163 - Atu0968 0.16 -0.8 958,163 - Atu0968 0.16 +0.4 958,165 + Atu0968 0.17 +0.8 958,165 + Atu0968 0.17 -0.1 958,165 + Atu0968 0.17 -0.8 958,174 - Atu0968 0.20 -0.3 958,178 + Atu0968 0.22 -0.1 958,179 + Atu0968 0.23 +0.1 958,235 - Atu0968 0.46 +0.3 958,260 + Atu0968 0.56 -0.3 958,260 + Atu0968 0.56 -0.1 958,284 + Atu0968 0.66 -0.2 958,287 - Atu0968 0.68 -0.0 958,289 + Atu0968 0.68 +0.4 958,297 - Atu0968 0.72 +0.1 958,326 + Atu0968 0.84 +0.4 958,326 + Atu0968 0.84 -0.5 958,334 - Atu0968 0.87 +0.1 958,345 - -2.2 958,867 + +1.5 959,105 - Atu0970 0.38 -0.3 959,230 - Atu0970 0.56 -1.2 959,333 - Atu0970 0.72 -0.5
Or see this region's nucleotide sequence