Strain Fitness in Agrobacterium fabrum C58 around Atu0869

Experiment: 4-Hydroxybenzoic Acid 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0868 and Atu0869 are separated by 48 nucleotidesAtu0869 and Atu0870 are separated by 5 nucleotides Atu0868: Atu0868 - hypothetical protein, at 864,882 to 865,589 Atu0868 Atu0869: Atu0869 - hypothetical protein, at 865,638 to 866,006 Atu0869 Atu0870: Atu0870 - trans-aconitate methyltransferase, at 866,012 to 866,782 Atu0870 Position (kb) 865 866 867Strain fitness (log2 ratio) -1 0 1at 864.654 kb on - strandat 864.748 kb on + strandat 864.761 kb on - strandat 864.761 kb on - strandat 864.801 kb on + strandat 864.809 kb on - strandat 864.832 kb on + strandat 864.850 kb on + strandat 864.850 kb on + strandat 864.850 kb on + strandat 864.981 kb on - strand, within Atu0868at 865.039 kb on - strand, within Atu0868at 865.047 kb on + strand, within Atu0868at 865.122 kb on + strand, within Atu0868at 865.138 kb on + strand, within Atu0868at 865.146 kb on - strand, within Atu0868at 865.166 kb on + strand, within Atu0868at 865.169 kb on - strand, within Atu0868at 865.248 kb on - strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.271 kb on - strand, within Atu0868at 865.276 kb on - strand, within Atu0868at 865.283 kb on - strand, within Atu0868at 865.325 kb on + strand, within Atu0868at 865.333 kb on - strand, within Atu0868at 865.412 kb on + strand, within Atu0868at 865.430 kb on - strand, within Atu0868at 865.441 kb on - strand, within Atu0868at 865.635 kb on + strandat 865.635 kb on + strandat 865.643 kb on - strandat 865.661 kb on + strandat 865.694 kb on + strand, within Atu0869at 865.694 kb on + strand, within Atu0869at 865.694 kb on + strand, within Atu0869at 865.700 kb on - strand, within Atu0869at 865.702 kb on - strand, within Atu0869at 865.704 kb on + strand, within Atu0869at 865.709 kb on + strand, within Atu0869at 865.717 kb on - strand, within Atu0869at 865.733 kb on - strand, within Atu0869at 865.757 kb on - strand, within Atu0869at 865.781 kb on - strand, within Atu0869at 865.794 kb on - strand, within Atu0869at 865.806 kb on - strand, within Atu0869at 865.949 kb on + strand, within Atu0869at 865.949 kb on - strand, within Atu0869at 865.980 kb on - strandat 865.994 kb on - strandat 866.010 kb on + strandat 866.122 kb on - strand, within Atu0870at 866.216 kb on + strand, within Atu0870at 866.236 kb on - strand, within Atu0870at 866.288 kb on + strand, within Atu0870at 866.338 kb on - strand, within Atu0870at 866.470 kb on - strand, within Atu0870at 866.482 kb on + strand, within Atu0870at 866.498 kb on - strand, within Atu0870at 866.598 kb on - strand, within Atu0870at 866.660 kb on - strand, within Atu0870at 866.669 kb on + strand, within Atu0870at 866.811 kb on + strandat 866.982 kb on + strandat 866.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM
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864,654 - +0.9
864,748 + -0.4
864,761 - +0.3
864,761 - +0.9
864,801 + -0.7
864,809 - +0.7
864,832 + +0.7
864,850 + +0.1
864,850 + +0.7
864,850 + -0.0
864,981 - Atu0868 0.14 +0.2
865,039 - Atu0868 0.22 +0.3
865,047 + Atu0868 0.23 -0.2
865,122 + Atu0868 0.34 -0.0
865,138 + Atu0868 0.36 -0.3
865,146 - Atu0868 0.37 -0.9
865,166 + Atu0868 0.40 -0.3
865,169 - Atu0868 0.41 -0.2
865,248 - Atu0868 0.52 +0.1
865,263 + Atu0868 0.54 +0.4
865,263 + Atu0868 0.54 -0.2
865,263 + Atu0868 0.54 +1.5
865,271 - Atu0868 0.55 -0.4
865,276 - Atu0868 0.56 -0.6
865,283 - Atu0868 0.57 +0.3
865,325 + Atu0868 0.63 -0.3
865,333 - Atu0868 0.64 -0.1
865,412 + Atu0868 0.75 +0.2
865,430 - Atu0868 0.77 -0.2
865,441 - Atu0868 0.79 -0.2
865,635 + -0.3
865,635 + +0.7
865,643 - +0.1
865,661 + -0.6
865,694 + Atu0869 0.15 +0.7
865,694 + Atu0869 0.15 -1.7
865,694 + Atu0869 0.15 +0.0
865,700 - Atu0869 0.17 -0.0
865,702 - Atu0869 0.17 -0.5
865,704 + Atu0869 0.18 +0.5
865,709 + Atu0869 0.19 +0.2
865,717 - Atu0869 0.21 -0.5
865,733 - Atu0869 0.26 +0.1
865,757 - Atu0869 0.32 -0.0
865,781 - Atu0869 0.39 +0.2
865,794 - Atu0869 0.42 +0.4
865,806 - Atu0869 0.46 +0.2
865,949 + Atu0869 0.84 +0.9
865,949 - Atu0869 0.84 -0.0
865,980 - -0.6
865,994 - +0.1
866,010 + -0.1
866,122 - Atu0870 0.14 +0.0
866,216 + Atu0870 0.26 +0.3
866,236 - Atu0870 0.29 -1.0
866,288 + Atu0870 0.36 -0.0
866,338 - Atu0870 0.42 -0.4
866,470 - Atu0870 0.59 +0.1
866,482 + Atu0870 0.61 +1.0
866,498 - Atu0870 0.63 +0.1
866,598 - Atu0870 0.76 +0.8
866,660 - Atu0870 0.84 +0.8
866,669 + Atu0870 0.85 -0.1
866,811 + -0.1
866,982 + +0.1
866,998 - +0.7

Or see this region's nucleotide sequence