Strain Fitness in Agrobacterium fabrum C58 around Atu0677
Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 4-Hydroxybenzoic Acid 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 672,381 | + | -0.4 | |||
| 672,518 | - | Atu0677 | 0.26 | +0.1 | |
| 672,531 | - | Atu0677 | 0.30 | -0.4 | |
| 672,698 | - | Atu0677 | 0.75 | -2.7 | |
| 672,893 | + | -0.4 | |||
| 672,894 | - | -0.4 | |||
| 672,987 | - | Atu0678 | 0.16 | +0.1 | |
| 673,348 | + | Atu0678 | 0.48 | -1.1 | |
| 673,375 | - | Atu0678 | 0.50 | -0.2 | |
| 673,417 | + | Atu0678 | 0.54 | +0.7 | |
| 673,548 | + | Atu0678 | 0.66 | -0.8 | |
| 673,574 | + | Atu0678 | 0.68 | +0.7 | |
| 673,582 | - | Atu0678 | 0.69 | -1.8 | |
| 673,593 | + | Atu0678 | 0.70 | -0.5 | |
| 673,614 | - | Atu0678 | 0.72 | -0.0 | |
| 673,697 | - | Atu0678 | 0.79 | +0.1 |
Or see this region's nucleotide sequence