Strain Fitness in Agrobacterium fabrum C58 around Atu0361
Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 4-Hydroxybenzoic Acid 5 mM |
|---|---|---|---|---|---|
| remove | |||||
| 354,764 | - | Atu0360 | 0.47 | -0.1 | |
| 354,951 | + | Atu0360 | 0.58 | -0.9 | |
| 354,952 | + | Atu0360 | 0.58 | -0.0 | |
| 354,957 | + | Atu0360 | 0.59 | +0.7 | |
| 354,968 | - | Atu0360 | 0.59 | -0.6 | |
| 354,987 | - | Atu0360 | 0.61 | -1.5 | |
| 355,143 | + | Atu0360 | 0.70 | -0.2 | |
| 355,196 | - | Atu0360 | 0.74 | -0.4 | |
| 355,207 | - | Atu0360 | 0.74 | +0.5 | |
| 355,229 | - | Atu0360 | 0.76 | -0.6 | |
| 355,229 | - | Atu0360 | 0.76 | +0.1 | |
| 355,338 | - | Atu0360 | 0.83 | +0.0 | |
| 355,358 | + | Atu0360 | 0.84 | -0.1 | |
| 355,450 | + | Atu0360 | 0.90 | -0.2 | |
| 355,639 | + | -0.4 | |||
| 355,715 | + | +0.1 | |||
| 355,723 | - | -0.4 | |||
| 355,767 | + | -1.6 | |||
| 355,775 | - | -0.0 | |||
| 355,775 | - | -1.1 | |||
| 355,853 | - | Atu0361 | 0.25 | +0.7 | |
| 356,000 | + | Atu0361 | 0.60 | -0.3 | |
| 356,000 | + | Atu0361 | 0.60 | -0.4 | |
| 356,026 | - | Atu0361 | 0.66 | +1.1 | |
| 356,124 | - | Atu0361 | 0.90 | -1.3 | |
| 356,206 | - | -0.1 |
Or see this region's nucleotide sequence