Strain Fitness in Agrobacterium fabrum C58 around Atu8198

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
1,666,302	+		Atu4519	0.63	-0.1
1,666,302	+		Atu4519	0.63	-0.8
1,666,302	+		Atu4519	0.63	+0.1
1,666,310	-		Atu4519	0.64	+0.0
1,666,310	-		Atu4519	0.64	+0.2
1,666,310	-		Atu4519	0.64	+0.6
1,666,310	-		Atu4519	0.64	+0.1
1,666,316	-		Atu4519	0.64	-0.2
1,666,371	-		Atu4519	0.69	+0.4
1,666,440	-		Atu4519	0.75	+1.0
1,666,525	-		Atu4519	0.82	+0.3
1,666,615	-		Atu4519	0.90	+2.1
1,666,624	-				-0.2
1,666,672	+				+0.3
1,666,710	+				+0.1
1,666,900	+				-0.2
1,666,984	-				+0.4
1,667,006	+				+0.0
1,667,024	-				+0.5
1,667,179	+		Atu8198	0.27	+0.6
1,667,190	+		Atu8198	0.30	-0.1
1,667,210	-		Atu8198	0.35	+0.4
1,667,220	+		Atu8198	0.38	+0.7
1,667,221	-		Atu8198	0.38	+0.1
1,667,264	+		Atu8198	0.50	+1.4
1,667,264	+		Atu8198	0.50	-0.3
1,667,264	+		Atu8198	0.50	+0.0
1,667,264	+		Atu8198	0.50	+0.5
1,667,264	+		Atu8198	0.50	+0.4
1,667,272	-		Atu8198	0.52	-0.2
1,667,272	-		Atu8198	0.52	+1.1
1,667,272	-		Atu8198	0.52	-0.2
1,667,272	-		Atu8198	0.52	-0.3
1,667,272	-		Atu8198	0.52	+0.0
1,667,272	-		Atu8198	0.52	-0.0
1,667,290	+		Atu8198	0.57	-0.1
1,667,516	-				+0.1
1,667,525	+				+0.0
1,667,597	+				-0.3
1,667,644	-		Atu4521	0.13	+0.3
1,667,661	-		Atu4521	0.15	-0.3
1,667,687	+		Atu4521	0.18	-0.7
1,667,717	-		Atu4521	0.22	-0.5
1,667,818	+		Atu4521	0.34	+0.3
1,667,820	+		Atu4521	0.35	-0.1
1,667,826	-		Atu4521	0.35	+1.2
1,667,828	+		Atu4521	0.36	-0.1
1,667,830	+		Atu4521	0.36	+0.0
1,667,876	+		Atu4521	0.41	+0.2
1,667,876	+		Atu4521	0.41	-1.2
1,667,884	-		Atu4521	0.42	+0.0
1,667,940	-		Atu4521	0.49	-1.2
1,667,942	-		Atu4521	0.49	+0.2
1,668,053	-		Atu4521	0.63	+0.0
1,668,215	-		Atu4521	0.82	+0.4
1,668,239	+		Atu4521	0.85	+0.1
1,668,263	-		Atu4521	0.88	+0.0
1,668,355	+				-0.2
1,668,363	-				+0.2
1,668,368	-				-1.5
1,668,375	-				+0.0
1,668,436	+				+1.0