Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5172 and Atu5173 are separated by 51 nucleotides Atu5173 and Atu8203 are separated by 509 nucleotides
Atu5172: Atu5172 - type IV secretion protein AvhB11, at 169,100 to 170,110
Atu5172
Atu5173: Atu5173 - dehydrogenase, at 170,162 to 170,551
Atu5173
Atu8203: Atu8203 - hypothetical protein, at 171,061 to 171,345
Atu8203
Position (kb) 170
171 Strain fitness (log2 ratio) -1
0
1 at 169.165 kb on + strand at 169.319 kb on + strand, within Atu5172 at 169.421 kb on - strand, within Atu5172 at 169.448 kb on - strand, within Atu5172 at 169.454 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.523 kb on + strand, within Atu5172 at 169.527 kb on - strand, within Atu5172 at 169.698 kb on + strand, within Atu5172 at 169.821 kb on + strand, within Atu5172 at 169.903 kb on - strand, within Atu5172 at 169.932 kb on + strand, within Atu5172 at 170.076 kb on - strand at 170.082 kb on - strand at 170.141 kb on - strand at 170.191 kb on + strand at 170.243 kb on + strand, within Atu5173 at 170.265 kb on - strand, within Atu5173 at 170.301 kb on + strand, within Atu5173 at 170.365 kb on - strand, within Atu5173 at 170.563 kb on + strand at 170.599 kb on + strand at 170.599 kb on + strand at 170.715 kb on + strand at 170.857 kb on + strand at 170.871 kb on + strand at 170.878 kb on - strand at 170.879 kb on - strand at 170.879 kb on - strand at 170.967 kb on + strand at 171.053 kb on + strand at 171.107 kb on + strand, within Atu8203 at 171.176 kb on + strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.240 kb on - strand, within Atu8203 at 171.291 kb on + strand, within Atu8203 at 171.321 kb on + strand at 171.371 kb on - strand at 171.376 kb on - strand at 171.385 kb on + strand at 171.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 169,165 + +0.2 169,319 + Atu5172 0.22 +0.1 169,421 - Atu5172 0.32 +0.2 169,448 - Atu5172 0.34 -0.0 169,454 - Atu5172 0.35 +0.0 169,512 - Atu5172 0.41 -0.3 169,512 - Atu5172 0.41 +0.2 169,519 + Atu5172 0.41 -0.9 169,519 + Atu5172 0.41 +0.1 169,523 + Atu5172 0.42 +0.1 169,527 - Atu5172 0.42 -0.1 169,698 + Atu5172 0.59 +0.2 169,821 + Atu5172 0.71 +0.0 169,903 - Atu5172 0.79 -0.3 169,932 + Atu5172 0.82 +0.0 170,076 - +0.1 170,082 - +0.2 170,141 - +0.4 170,191 + +0.3 170,243 + Atu5173 0.21 +0.6 170,265 - Atu5173 0.26 -0.0 170,301 + Atu5173 0.36 +0.6 170,365 - Atu5173 0.52 +0.6 170,563 + -1.0 170,599 + -0.8 170,599 + -0.2 170,715 + -0.1 170,857 + +1.0 170,871 + -0.1 170,878 - -0.3 170,879 - -0.3 170,879 - -0.9 170,967 + -0.0 171,053 + -0.1 171,107 + Atu8203 0.16 +0.3 171,176 + Atu8203 0.40 +0.6 171,240 - Atu8203 0.63 +0.7 171,240 - Atu8203 0.63 -0.2 171,291 + Atu8203 0.81 -0.3 171,321 + +0.1 171,371 - -0.4 171,376 - -0.0 171,385 + +0.0 171,417 - -0.1
Or see this region's nucleotide sequence