Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5165 and Atu5166 overlap by 1 nucleotides Atu5166 and Atu5167 are separated by 234 nucleotides Atu5167 and Atu5168 are separated by 35 nucleotides Atu5168 and Atu5169 are separated by 3 nucleotides Atu5169 and Atu5170 overlap by 1 nucleotides
Atu5165: Atu5165 - type IV secretion protein AvhB4, at 161,935 to 164,208
Atu5165
Atu5166: Atu5166 - type IV secretion protein AvhB5, at 164,208 to 164,906
Atu5166
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378
Atu5168
Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053
Atu5169
Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904
Atu5170
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1
2 at 164.156 kb on - strand at 164.171 kb on + strand at 164.237 kb on + strand at 164.245 kb on - strand at 164.249 kb on + strand at 164.321 kb on + strand, within Atu5166 at 164.339 kb on + strand, within Atu5166 at 164.439 kb on + strand, within Atu5166 at 164.664 kb on + strand, within Atu5166 at 164.672 kb on - strand, within Atu5166 at 164.735 kb on - strand, within Atu5166 at 164.807 kb on + strand, within Atu5166 at 164.826 kb on + strand, within Atu5166 at 164.903 kb on + strand at 164.903 kb on + strand at 164.915 kb on - strand at 164.946 kb on - strand at 164.970 kb on + strand at 165.090 kb on + strand at 165.122 kb on + strand at 165.150 kb on + strand at 165.173 kb on + strand at 165.253 kb on + strand, within Atu5167 at 165.272 kb on + strand, within Atu5167 at 165.273 kb on + strand, within Atu5167 at 165.323 kb on - strand, within Atu5167 at 165.482 kb on - strand, within Atu5167 at 165.498 kb on + strand, within Atu5167 at 165.714 kb on - strand, within Atu5167 at 165.755 kb on + strand, within Atu5167 at 165.876 kb on + strand, within Atu5167 at 165.941 kb on + strand, within Atu5167 at 165.986 kb on + strand at 165.986 kb on + strand at 165.994 kb on - strand at 166.006 kb on - strand at 166.114 kb on + strand at 166.179 kb on - strand, within Atu5168 at 166.438 kb on + strand at 166.446 kb on - strand at 166.455 kb on - strand, within Atu5169 at 166.501 kb on - strand, within Atu5169 at 166.514 kb on + strand, within Atu5169 at 166.554 kb on - strand, within Atu5169 at 166.555 kb on + strand, within Atu5169 at 166.691 kb on + strand, within Atu5169 at 166.704 kb on - strand, within Atu5169 at 166.782 kb on - strand, within Atu5169 at 166.832 kb on + strand, within Atu5169 at 166.983 kb on - strand, within Atu5169 at 167.041 kb on - strand at 167.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 164,156 - +0.0 164,171 + -0.3 164,237 + +0.0 164,245 - -0.3 164,249 + +1.8 164,321 + Atu5166 0.16 -0.0 164,339 + Atu5166 0.19 -0.3 164,439 + Atu5166 0.33 +0.4 164,664 + Atu5166 0.65 -0.1 164,672 - Atu5166 0.66 +0.3 164,735 - Atu5166 0.75 -0.1 164,807 + Atu5166 0.86 +0.5 164,826 + Atu5166 0.88 -0.5 164,903 + -0.7 164,903 + -0.1 164,915 - +0.2 164,946 - -0.2 164,970 + -0.4 165,090 + -0.1 165,122 + -0.4 165,150 + +1.6 165,173 + +0.9 165,253 + Atu5167 0.12 +0.6 165,272 + Atu5167 0.14 +1.8 165,273 + Atu5167 0.14 +0.1 165,323 - Atu5167 0.19 +0.5 165,482 - Atu5167 0.36 -0.3 165,498 + Atu5167 0.38 -0.3 165,714 - Atu5167 0.61 +1.5 165,755 + Atu5167 0.66 +0.5 165,876 + Atu5167 0.79 -1.0 165,941 + Atu5167 0.85 +0.5 165,986 + -0.8 165,986 + +0.8 165,994 - +0.1 166,006 - -0.0 166,114 + +0.8 166,179 - Atu5168 0.25 +0.4 166,438 + +0.0 166,446 - -0.8 166,455 - Atu5169 0.11 +0.5 166,501 - Atu5169 0.18 +0.2 166,514 + Atu5169 0.20 -0.0 166,554 - Atu5169 0.26 -0.2 166,555 + Atu5169 0.26 -0.3 166,691 + Atu5169 0.46 +0.6 166,704 - Atu5169 0.48 -0.1 166,782 - Atu5169 0.60 +0.3 166,832 + Atu5169 0.67 +0.2 166,983 - Atu5169 0.89 +1.3 167,041 - -0.1 167,041 - +0.8
Or see this region's nucleotide sequence