Strain Fitness in Agrobacterium fabrum C58 around Atu5028

Experiment: 4-Hydroxybenzoic Acid 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5026 and Atu5027 are separated by 120 nucleotidesAtu5027 and Atu5028 overlap by 4 nucleotidesAtu5028 and Atu5029 are separated by 170 nucleotides Atu5026: Atu5026 - hypothetical protein, at 28,294 to 28,704 Atu5026 Atu5027: Atu5027 - IS 426 transposase, at 28,825 to 29,379 Atu5027 Atu5028: Atu5028 - IS426 transposase, at 29,376 to 29,753 Atu5028 Atu5029: Atu5029 - hypothetical protein, at 29,924 to 30,694 Atu5029 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1at 28.386 kb on - strand, within Atu5026at 28.399 kb on + strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.407 kb on - strand, within Atu5026at 28.517 kb on - strand, within Atu5026at 28.639 kb on + strand, within Atu5026at 28.641 kb on - strand, within Atu5026at 28.684 kb on - strandat 28.684 kb on - strandat 28.809 kb on + strandat 28.846 kb on - strandat 28.848 kb on + strandat 28.848 kb on + strandat 28.856 kb on + strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.856 kb on - strandat 28.864 kb on - strandat 28.911 kb on + strand, within Atu5027at 28.911 kb on + strand, within Atu5027at 28.911 kb on + strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.919 kb on - strand, within Atu5027at 28.999 kb on - strand, within Atu5027at 29.022 kb on + strand, within Atu5027at 29.023 kb on + strand, within Atu5027at 29.030 kb on - strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.044 kb on + strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.052 kb on - strand, within Atu5027at 29.056 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.063 kb on + strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.071 kb on - strand, within Atu5027at 29.078 kb on - strand, within Atu5027at 29.105 kb on + strand, within Atu5027at 29.108 kb on - strand, within Atu5027at 29.110 kb on - strand, within Atu5027at 29.124 kb on - strand, within Atu5027at 29.166 kb on + strand, within Atu5027at 29.167 kb on - strand, within Atu5027at 29.172 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.180 kb on - strand, within Atu5027at 29.190 kb on - strand, within Atu5027at 29.203 kb on - strand, within Atu5027at 29.203 kb on - strand, within Atu5027at 29.205 kb on - strand, within Atu5027at 29.360 kb on - strandat 29.441 kb on - strand, within Atu5028at 29.629 kb on + strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.697 kb on - strand, within Atu5028at 29.750 kb on + strandat 29.756 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.764 kb on - strandat 29.770 kb on - strandat 29.770 kb on - strandat 29.780 kb on - strandat 29.846 kb on - strandat 29.923 kb on - strandat 29.938 kb on + strandat 29.983 kb on - strandat 30.003 kb on - strand, within Atu5029at 30.074 kb on + strand, within Atu5029at 30.089 kb on - strand, within Atu5029at 30.089 kb on - strand, within Atu5029at 30.094 kb on - strand, within Atu5029at 30.128 kb on + strand, within Atu5029at 30.183 kb on - strand, within Atu5029at 30.206 kb on - strand, within Atu5029at 30.208 kb on + strand, within Atu5029at 30.268 kb on + strand, within Atu5029at 30.276 kb on - strand, within Atu5029at 30.276 kb on - strand, within Atu5029at 30.294 kb on + strand, within Atu5029at 30.321 kb on - strand, within Atu5029at 30.338 kb on - strand, within Atu5029at 30.347 kb on - strand, within Atu5029at 30.416 kb on + strand, within Atu5029at 30.562 kb on - strand, within Atu5029at 30.581 kb on + strand, within Atu5029at 30.644 kb on - strandat 30.706 kb on - strandat 30.706 kb on - strandat 30.725 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM
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28,386 - Atu5026 0.22 -0.8
28,399 + Atu5026 0.26 -0.2
28,407 - Atu5026 0.27 -0.5
28,407 - Atu5026 0.27 -0.1
28,517 - Atu5026 0.54 +0.2
28,639 + Atu5026 0.84 -0.2
28,641 - Atu5026 0.84 -0.0
28,684 - +0.5
28,684 - +0.0
28,809 + -0.4
28,846 - +0.2
28,848 + +1.3
28,848 + +0.6
28,856 + -0.1
28,856 - -0.2
28,856 - -0.3
28,856 - -0.1
28,856 - -0.4
28,864 - -0.2
28,911 + Atu5027 0.15 -1.1
28,911 + Atu5027 0.15 -0.1
28,911 + Atu5027 0.15 -1.1
28,919 - Atu5027 0.17 +1.3
28,919 - Atu5027 0.17 +0.0
28,919 - Atu5027 0.17 +0.6
28,999 - Atu5027 0.31 -0.0
29,022 + Atu5027 0.35 -0.6
29,023 + Atu5027 0.36 +0.1
29,030 - Atu5027 0.37 -0.2
29,044 + Atu5027 0.39 -0.1
29,044 + Atu5027 0.39 -1.1
29,052 - Atu5027 0.41 -0.5
29,052 - Atu5027 0.41 +1.2
29,056 + Atu5027 0.42 +0.3
29,063 + Atu5027 0.43 -1.5
29,063 + Atu5027 0.43 +0.5
29,071 - Atu5027 0.44 +0.1
29,071 - Atu5027 0.44 +0.2
29,078 - Atu5027 0.46 -0.2
29,105 + Atu5027 0.50 +0.4
29,108 - Atu5027 0.51 -0.0
29,110 - Atu5027 0.51 +1.6
29,124 - Atu5027 0.54 -0.2
29,166 + Atu5027 0.61 -0.0
29,167 - Atu5027 0.62 +0.1
29,172 - Atu5027 0.63 -0.7
29,180 - Atu5027 0.64 +0.6
29,180 - Atu5027 0.64 +0.1
29,190 - Atu5027 0.66 -0.3
29,203 - Atu5027 0.68 -0.1
29,203 - Atu5027 0.68 +0.1
29,205 - Atu5027 0.68 -0.4
29,360 - +0.1
29,441 - Atu5028 0.17 +0.2
29,629 + Atu5028 0.67 +1.6
29,697 - Atu5028 0.85 +0.1
29,697 - Atu5028 0.85 +0.0
29,697 - Atu5028 0.85 -0.6
29,697 - Atu5028 0.85 +1.0
29,750 + -0.3
29,756 + -0.3
29,762 + +0.3
29,762 + +0.1
29,762 + -1.8
29,762 + +1.3
29,764 - -0.1
29,770 - +0.0
29,770 - +0.2
29,780 - -0.4
29,846 - -0.3
29,923 - +0.5
29,938 + +0.1
29,983 - -0.2
30,003 - Atu5029 0.10 -0.1
30,074 + Atu5029 0.19 -0.3
30,089 - Atu5029 0.21 -0.3
30,089 - Atu5029 0.21 -0.5
30,094 - Atu5029 0.22 +0.1
30,128 + Atu5029 0.26 -0.1
30,183 - Atu5029 0.34 -0.2
30,206 - Atu5029 0.37 -0.4
30,208 + Atu5029 0.37 -0.2
30,268 + Atu5029 0.45 +0.8
30,276 - Atu5029 0.46 -0.7
30,276 - Atu5029 0.46 -0.2
30,294 + Atu5029 0.48 -0.4
30,321 - Atu5029 0.51 -0.4
30,338 - Atu5029 0.54 +0.4
30,347 - Atu5029 0.55 -1.0
30,416 + Atu5029 0.64 -0.0
30,562 - Atu5029 0.83 -0.2
30,581 + Atu5029 0.85 -0.2
30,644 - +0.7
30,706 - -0.1
30,706 - -0.2
30,725 + +1.0

Or see this region's nucleotide sequence