Strain Fitness in Agrobacterium fabrum C58 around Atu4846

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
2,025,356	-				+1.0
2,025,598	+		Atu4845	0.30	+0.2
2,025,600	+		Atu4845	0.30	-0.2
2,025,606	-		Atu4845	0.30	-0.1
2,025,619	+		Atu4845	0.32	-0.2
2,025,619	+		Atu4845	0.32	+0.3
2,025,625	-		Atu4845	0.32	+0.1
2,025,627	-		Atu4845	0.33	+0.1
2,025,627	-		Atu4845	0.33	+0.0
2,025,641	+		Atu4845	0.34	+0.0
2,025,721	+		Atu4845	0.42	+0.3
2,025,737	+		Atu4845	0.44	-0.6
2,025,737	+		Atu4845	0.44	-0.1
2,025,740	-		Atu4845	0.44	+0.1
2,025,745	-		Atu4845	0.44	+0.1
2,025,750	-		Atu4845	0.45	+1.0
2,025,761	-		Atu4845	0.46	+0.4
2,025,763	+		Atu4845	0.46	-1.6
2,025,821	-		Atu4845	0.52	+0.5
2,025,869	+		Atu4845	0.57	-0.3
2,025,897	+		Atu4845	0.60	+0.0
2,025,918	+		Atu4845	0.62	+0.9
2,025,920	-		Atu4845	0.62	+0.0
2,025,920	-		Atu4845	0.62	-0.0
2,025,948	+		Atu4845	0.65	+0.1
2,025,950	+		Atu4845	0.65	-0.3
2,026,048	+		Atu4845	0.75	+0.3
2,026,105	-		Atu4845	0.80	+0.0
2,026,181	+		Atu4845	0.88	+0.4
2,026,378	+				-0.3
2,026,378	+				-0.1
2,026,494	-		Atu4846	0.17	+0.2
2,026,501	+		Atu4846	0.18	-0.4
2,026,501	+		Atu4846	0.18	+0.7
2,026,509	-		Atu4846	0.19	-0.0
2,026,513	-		Atu4846	0.19	+0.6
2,026,622	+		Atu4846	0.29	+0.2
2,026,625	-		Atu4846	0.30	-0.0
2,026,820	-		Atu4846	0.48	+0.7
2,026,829	+		Atu4846	0.48	+2.0
2,026,848	+		Atu4846	0.50	+1.0
2,026,911	+		Atu4846	0.56	-0.1
2,026,913	+		Atu4846	0.56	+0.6
2,026,929	-		Atu4846	0.58	+0.4
2,027,012	+		Atu4846	0.65	+0.0
2,027,012	+		Atu4846	0.65	+0.4
2,027,058	+		Atu4846	0.70	-2.0
2,027,103	-		Atu4846	0.74	+0.1
2,027,126	+		Atu4846	0.76	+1.3
2,027,126	+		Atu4846	0.76	-0.0
2,027,134	-		Atu4846	0.77	+0.8
2,027,141	-		Atu4846	0.77	-0.2
2,027,141	-		Atu4846	0.77	+0.3
2,027,152	+		Atu4846	0.78	+0.2
2,027,168	-		Atu4846	0.80	+0.1
2,027,171	+		Atu4846	0.80	+0.2
2,027,171	+		Atu4846	0.80	+0.3
2,027,171	+		Atu4846	0.80	+0.7
2,027,171	+		Atu4846	0.80	+1.3
2,027,179	-		Atu4846	0.81	+0.2
2,027,179	-		Atu4846	0.81	+0.1
2,027,179	-		Atu4846	0.81	-0.2
2,027,179	-		Atu4846	0.81	-0.5
2,027,179	-		Atu4846	0.81	+0.6
2,027,179	-		Atu4846	0.81	+0.0
2,027,179	-		Atu4846	0.81	+0.3
2,027,185	+		Atu4846	0.81	+0.2
2,027,185	+		Atu4846	0.81	+0.7
2,027,193	-		Atu4846	0.82	-0.6
2,027,271	+		Atu4846	0.89	+0.2
2,027,309	-				+0.2
2,027,328	-				-0.1
2,027,335	+				-0.1
2,027,343	-				-0.3
2,027,390	-				+0.3
2,027,390	-				+0.2
2,027,461	+				+0.1
2,027,462	-				-0.3
2,027,542	+		Atu4847	0.14	+0.2
2,027,544	-		Atu4847	0.14	-0.6
2,027,577	-		Atu4847	0.18	-0.1
2,027,621	+		Atu4847	0.22	+0.2
2,027,625	+		Atu4847	0.23	-0.3
2,027,692	+		Atu4847	0.30	+0.0
2,027,736	-		Atu4847	0.35	+0.0
2,027,780	+		Atu4847	0.39	+0.1
2,027,786	-		Atu4847	0.40	-0.2
2,027,796	+		Atu4847	0.41	+0.1
2,027,807	+		Atu4847	0.42	-0.2
2,027,850	+		Atu4847	0.47	+0.6
2,027,884	+		Atu4847	0.50	+1.0
2,027,970	-		Atu4847	0.59	-0.0
2,028,012	+		Atu4847	0.64	+0.6
2,028,020	-		Atu4847	0.65	-0.2
2,028,031	-		Atu4847	0.66	-0.1
2,028,076	+		Atu4847	0.71	+0.7
2,028,142	-		Atu4847	0.78	-0.5
2,028,157	+		Atu4847	0.79	-0.5
2,028,163	-		Atu4847	0.80	+0.1
2,028,205	-		Atu4847	0.84	-0.7
2,028,219	+		Atu4847	0.86	-0.1
2,028,219	+		Atu4847	0.86	-0.5
2,028,219	+		Atu4847	0.86	-0.6
2,028,219	+		Atu4847	0.86	+1.2
2,028,225	-		Atu4847	0.87	+0.0
2,028,227	-		Atu4847	0.87	-0.2
2,028,241	-		Atu4847	0.88	-0.7
2,028,245	+		Atu4847	0.89	+0.5
2,028,262	+				-0.2
2,028,280	-				-0.4
2,028,282	+				+0.7
2,028,282	+				+0.0
2,028,288	+				+0.2
2,028,288	+				+0.3
2,028,296	-				+0.1