Strain Fitness in Agrobacterium fabrum C58 around Atu4620

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
1,767,246	+		Atu4619	0.68	+0.3
1,767,257	-		Atu4619	0.69	+0.4
1,767,257	-		Atu4619	0.69	+0.2
1,767,267	-		Atu4619	0.69	-0.1
1,767,310	-		Atu4619	0.71	+0.0
1,767,418	+		Atu4619	0.76	+0.3
1,767,496	-		Atu4619	0.80	-0.3
1,767,498	+		Atu4619	0.80	+0.1
1,767,508	+		Atu4619	0.81	+0.3
1,767,516	-		Atu4619	0.81	+0.3
1,767,517	+		Atu4619	0.81	-1.5
1,767,552	+		Atu4619	0.83	+0.4
1,767,557	+		Atu4619	0.83	+1.6
1,767,602	+		Atu4619	0.85	-0.2
1,767,602	+		Atu4619	0.85	+0.7
1,767,604	-		Atu4619	0.85	-0.7
1,767,641	+		Atu4619	0.87	+0.6
1,767,663	+		Atu4619	0.88	-0.3
1,767,748	+				+0.1
1,767,810	+				+0.9
1,767,813	-				+0.2
1,767,860	+				+0.2
1,767,868	-				+0.3
1,767,868	-				+0.7
1,767,930	+				-0.2
1,768,048	-				-0.1
1,768,097	+				-1.2
1,768,134	+				-0.7
1,768,175	+				+0.5
1,768,196	+				+0.1
1,768,199	+				-0.1
1,768,201	+				-0.1
1,768,203	+				-0.0
1,768,204	-				+0.4
1,768,204	-				-0.1
1,768,204	-				-0.2
1,768,228	+				+0.9
1,768,235	+				+0.6
1,768,240	+				+0.1
1,768,240	+				-0.4
1,768,240	+				-0.0
1,768,240	+				+0.3
1,768,243	-				-0.4
1,768,248	-		Atu4620	0.10	+1.1
1,768,248	-		Atu4620	0.10	+1.2
1,768,272	-		Atu4620	0.13	+0.1
1,768,304	-		Atu4620	0.18	-0.2
1,768,310	+		Atu4620	0.19	+0.6
1,768,381	-		Atu4620	0.28	+0.1
1,768,391	+		Atu4620	0.30	-0.1
1,768,399	-		Atu4620	0.31	+0.1
1,768,401	+		Atu4620	0.31	+0.0
1,768,461	+		Atu4620	0.39	+1.3
1,768,469	-		Atu4620	0.40	+0.2
1,768,542	-		Atu4620	0.50	+0.2
1,768,590	-		Atu4620	0.57	+0.0
1,768,611	-		Atu4620	0.59	-0.6
1,768,616	-		Atu4620	0.60	+1.5
1,768,649	-		Atu4620	0.64	-0.1
1,768,843	-				-0.1
1,768,891	+				-0.2
1,768,894	-				-0.2
1,768,908	-				-0.9
1,768,918	+				+0.0
1,768,926	-				+0.3
1,768,940	+				+0.1
1,768,940	+				-0.6
1,768,948	-				+0.3
1,768,948	-				+0.1
1,768,965	+				+1.4
1,768,973	-				-0.1
1,769,156	-		Atu4621	0.29	+0.1
1,769,206	+		Atu4621	0.35	+0.0
1,769,240	-		Atu4621	0.39	-0.5
1,769,250	-		Atu4621	0.41	-0.7
1,769,266	+		Atu4621	0.42	+1.1
1,769,269	-		Atu4621	0.43	-0.0
1,769,272	-		Atu4621	0.43	-0.8
1,769,274	-		Atu4621	0.43	+0.1
1,769,274	-		Atu4621	0.43	+0.4
1,769,274	-		Atu4621	0.43	-0.0
1,769,274	-		Atu4621	0.43	-0.2
1,769,282	+		Atu4621	0.44	+0.4
1,769,287	+		Atu4621	0.45	+0.2
1,769,287	+		Atu4621	0.45	+1.1
1,769,300	-		Atu4621	0.46	-0.9
1,769,300	-		Atu4621	0.46	+0.1
1,769,320	-		Atu4621	0.49	-0.2
1,769,373	+		Atu4621	0.55	+1.1
1,769,381	-		Atu4621	0.56	+1.7
1,769,381	-		Atu4621	0.56	-1.2
1,769,381	-		Atu4621	0.56	-0.2
1,769,403	+		Atu4621	0.59	+0.0
1,769,457	+		Atu4621	0.65	-0.3
1,769,470	-		Atu4621	0.67	+0.0
1,769,711	+				-0.3
1,769,725	+				-0.1
1,769,733	-				-0.3
1,769,742	+				+0.2
1,769,759	+				-0.7
1,769,793	+				+0.1
1,769,801	-				+0.1
1,769,824	-				+0.0