Strain Fitness in Agrobacterium fabrum C58 around Atu4543

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
1,687,559	+		Atu4541	0.84	-2.9
1,687,581	+		Atu4541	0.89	-0.1
1,687,581	+		Atu4541	0.89	-0.2
1,687,669	+				+1.8
1,687,687	-				+0.2
1,687,690	+				+1.0
1,687,690	+				+0.3
1,687,715	+		Atu4542	0.11	-0.3
1,687,780	+		Atu4542	0.19	+0.3
1,687,830	+		Atu4542	0.25	+0.1
1,687,848	-		Atu4542	0.27	+0.4
1,687,948	+		Atu4542	0.40	+0.7
1,687,956	-		Atu4542	0.41	+0.5
1,687,956	-		Atu4542	0.41	+0.2
1,687,956	-		Atu4542	0.41	-0.5
1,687,991	-		Atu4542	0.45	+0.4
1,688,039	+		Atu4542	0.51	+0.4
1,688,094	+		Atu4542	0.58	+0.4
1,688,249	+		Atu4542	0.77	+0.5
1,688,279	+		Atu4542	0.81	+0.2
1,688,280	-		Atu4542	0.81	+0.2
1,688,280	-		Atu4542	0.81	-0.3
1,688,417	-				+0.4
1,688,457	-				+0.8
1,688,820	+		Atu4543	0.32	+0.3
1,688,828	-		Atu4543	0.32	+0.8
1,689,026	+		Atu4543	0.54	+0.0
1,689,029	-		Atu4543	0.54	+0.7
1,689,036	+		Atu4543	0.55	+0.6
1,689,080	+		Atu4543	0.59	+0.5
1,689,088	-		Atu4543	0.60	+1.3
1,689,088	-		Atu4543	0.60	+0.4
1,689,276	+		Atu4543	0.80	+0.7
1,689,368	-				+0.2
1,689,446	+				+0.0
1,689,448	+				-0.2
1,689,592	+				-0.1
1,689,592	+				-0.2
1,689,592	+				+0.6
1,689,594	-				-0.5
1,689,600	-				+0.4
1,689,681	+		Atu4544	0.13	+0.8
1,689,757	+		Atu4544	0.19	+0.2
1,689,924	+		Atu4544	0.34	+0.1
1,690,036	+		Atu4544	0.43	+0.8
1,690,076	+		Atu4544	0.46	+0.4
1,690,099	+		Atu4544	0.48	+1.4
1,690,099	-		Atu4544	0.48	+0.4
1,690,158	+		Atu4544	0.53	+0.7
1,690,166	-		Atu4544	0.54	+0.8
1,690,167	-		Atu4544	0.54	+0.1
1,690,167	-		Atu4544	0.54	+0.3
1,690,319	+		Atu4544	0.67	+0.0
1,690,373	-		Atu4544	0.72	+0.5
1,690,374	+		Atu4544	0.72	+0.0
1,690,417	-		Atu4544	0.76	+1.1
1,690,450	-		Atu4544	0.78	+0.5