Strain Fitness in Agrobacterium fabrum C58 around Atu4187
Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 4-Hydroxybenzoic Acid 5 mM |
---|---|---|---|---|---|
remove | |||||
1,310,335 | - | +1.0 | |||
1,310,469 | + | Atu4187 | 0.51 | +0.3 | |
1,311,087 | + | Atu4189 | 0.29 | +0.2 | |
1,311,095 | - | Atu4189 | 0.29 | -0.0 | |
1,311,167 | + | Atu4189 | 0.37 | -0.3 | |
1,311,261 | + | Atu4189 | 0.48 | -0.2 | |
1,311,304 | + | Atu4189 | 0.53 | +0.0 | |
1,311,340 | - | Atu4189 | 0.57 | -0.5 | |
1,311,340 | - | Atu4189 | 0.57 | -0.0 | |
1,311,490 | + | Atu4189 | 0.73 | -0.3 | |
1,311,498 | - | Atu4189 | 0.74 | -0.2 |
Or see this region's nucleotide sequence