Strain Fitness in Agrobacterium fabrum C58 around Atu4082

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
1,201,482	+		Atu4080	0.88	+0.7
1,201,482	+		Atu4080	0.88	+0.4
1,201,564	-				+0.2
1,201,703	+		Atu4081	0.18	+0.2
1,201,758	-		Atu4081	0.26	-0.5
1,201,760	+		Atu4081	0.26	-0.3
1,201,792	+		Atu4081	0.31	+0.2
1,201,863	-		Atu4081	0.40	-0.1
1,201,884	+		Atu4081	0.43	+1.3
1,201,884	+		Atu4081	0.43	+1.0
1,201,884	+		Atu4081	0.43	+0.3
1,201,884	+		Atu4081	0.43	+0.3
1,201,892	+		Atu4081	0.45	-0.8
1,202,048	-		Atu4081	0.66	+0.8
1,202,053	-		Atu4081	0.67	+0.2
1,202,091	+		Atu4081	0.72	+0.2
1,202,091	+		Atu4081	0.72	-0.9
1,202,101	-		Atu4081	0.74	+0.8
1,202,123	-		Atu4081	0.77	-0.2
1,202,127	+		Atu4081	0.77	+1.1
1,202,127	+		Atu4081	0.77	+0.7
1,202,135	-		Atu4081	0.79	+0.7
1,202,194	-		Atu4081	0.87	+0.3
1,202,231	+				+0.2
1,202,525	+		Atu4082	0.15	+0.2
1,202,558	+		Atu4082	0.22	+0.6
1,202,589	+		Atu4082	0.29	+0.2
1,202,589	+		Atu4082	0.29	+0.0
1,202,597	-		Atu4082	0.31	+0.7
1,202,671	+		Atu4082	0.47	+0.6
1,202,702	-		Atu4082	0.53	+0.5
1,202,708	-		Atu4082	0.55	-0.1
1,202,823	+		Atu4082	0.80	+0.3
1,202,832	-		Atu4082	0.82	+0.1
1,202,841	+		Atu4082	0.84	+0.3
1,202,865	-		Atu4082	0.89	-0.1
1,202,905	+				+0.1
1,202,905	+				+0.1
1,202,919	-				-0.3
1,202,931	+				-0.5
1,202,939	-				+0.3
1,202,939	-				-0.1
1,202,954	-				-0.4
1,202,964	+				-0.5
1,203,051	+		Atu4083	0.12	-0.1
1,203,111	-		Atu4083	0.18	+0.4
1,203,128	-		Atu4083	0.20	-0.0
1,203,196	+		Atu4083	0.27	-0.6
1,203,227	+		Atu4083	0.30	-0.0
1,203,229	+		Atu4083	0.30	-0.2
1,203,332	+		Atu4083	0.40	+0.7
1,203,421	-		Atu4083	0.49	-0.4
1,203,447	+		Atu4083	0.52	+0.3
1,203,447	+		Atu4083	0.52	+0.5
1,203,483	-		Atu4083	0.56	+1.0
1,203,514	-		Atu4083	0.59	-0.1
1,203,514	-		Atu4083	0.59	-0.8
1,203,514	-		Atu4083	0.59	-0.1
1,203,588	+		Atu4083	0.66	+0.9
1,203,783	-		Atu4083	0.86	-0.3