Strain Fitness in Agrobacterium fabrum C58 around Atu4080

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
1,199,952	+		Atu4078	0.85	-0.0
1,199,960	-		Atu4078	0.85	-0.2
1,200,000	-		Atu4078	0.87	-0.4
1,200,205	-				+0.8
1,200,205	-				+0.1
1,200,248	+				+0.9
1,200,266	+				-0.1
1,200,284	-				-1.8
1,200,325	+				-0.1
1,200,349	+				+0.0
1,200,349	+				+0.3
1,200,373	+				-0.0
1,200,400	+				-0.0
1,200,612	+		Atu4079	0.58	+0.4
1,200,620	-		Atu4079	0.61	-2.4
1,200,640	-		Atu4079	0.68	-0.4
1,200,653	+		Atu4079	0.72	+0.2
1,200,692	-		Atu4079	0.87	+0.0
1,200,791	+				+0.4
1,200,791	+				+0.3
1,200,858	+				+0.4
1,200,860	+				-0.3
1,200,885	+		Atu4080	0.11	+0.2
1,200,928	+		Atu4080	0.16	+1.0
1,200,944	+		Atu4080	0.18	+0.1
1,200,976	+		Atu4080	0.22	-0.0
1,201,012	-		Atu4080	0.27	-0.1
1,201,012	-		Atu4080	0.27	-0.0
1,201,030	-		Atu4080	0.29	+1.4
1,201,043	+		Atu4080	0.31	-0.1
1,201,178	-		Atu4080	0.49	+1.9
1,201,186	+		Atu4080	0.50	+0.3
1,201,252	+		Atu4080	0.58	-0.1
1,201,260	-		Atu4080	0.59	+0.7
1,201,315	+		Atu4080	0.66	-0.0
1,201,319	-		Atu4080	0.67	-0.2
1,201,323	+		Atu4080	0.67	+0.5
1,201,324	-		Atu4080	0.68	+0.5
1,201,432	+		Atu4080	0.82	+1.0
1,201,445	+		Atu4080	0.83	+0.4
1,201,482	+		Atu4080	0.88	+0.7
1,201,482	+		Atu4080	0.88	+0.4
1,201,564	-				+0.2
1,201,703	+		Atu4081	0.18	+0.2
1,201,758	-		Atu4081	0.26	-0.5
1,201,760	+		Atu4081	0.26	-0.3
1,201,792	+		Atu4081	0.31	+0.2
1,201,863	-		Atu4081	0.40	-0.1
1,201,884	+		Atu4081	0.43	+1.3
1,201,884	+		Atu4081	0.43	+1.0
1,201,884	+		Atu4081	0.43	+0.3
1,201,884	+		Atu4081	0.43	+0.3
1,201,892	+		Atu4081	0.45	-0.8
1,202,048	-		Atu4081	0.66	+0.8
1,202,053	-		Atu4081	0.67	+0.2
1,202,091	+		Atu4081	0.72	+0.2
1,202,091	+		Atu4081	0.72	-0.9
1,202,101	-		Atu4081	0.74	+0.8
1,202,123	-		Atu4081	0.77	-0.2
1,202,127	+		Atu4081	0.77	+1.1
1,202,127	+		Atu4081	0.77	+0.7
1,202,135	-		Atu4081	0.79	+0.7
1,202,194	-		Atu4081	0.87	+0.3
1,202,231	+				+0.2
1,202,525	+		Atu4082	0.15	+0.2
1,202,558	+		Atu4082	0.22	+0.6