Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3790 and Atu3791 are separated by 552 nucleotides Atu3791 and Atu3792 overlap by 4 nucleotides
Atu3790: Atu3790 - potassium-transporting ATPase subunit A, at 881,007 to 882,710
Atu3790
Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216
Atu3791
Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670
Atu3792
Position (kb) 883
884
885 Strain fitness (log2 ratio) -1
0
1
2
3 at 882.269 kb on - strand, within Atu3790 at 882.319 kb on + strand, within Atu3790 at 882.319 kb on + strand, within Atu3790 at 882.332 kb on - strand, within Atu3790 at 882.428 kb on + strand, within Atu3790 at 882.488 kb on - strand, within Atu3790 at 882.510 kb on + strand, within Atu3790 at 882.525 kb on + strand, within Atu3790 at 882.550 kb on - strand at 882.558 kb on + strand at 882.558 kb on + strand at 882.560 kb on - strand at 882.566 kb on - strand at 882.654 kb on - strand at 882.654 kb on - strand at 882.712 kb on + strand at 882.712 kb on - strand at 882.784 kb on + strand at 882.848 kb on + strand at 882.911 kb on + strand at 882.919 kb on - strand at 882.919 kb on - strand at 882.919 kb on - strand at 882.945 kb on + strand at 882.953 kb on - strand at 882.968 kb on + strand at 882.987 kb on + strand at 883.116 kb on + strand at 883.161 kb on + strand at 883.231 kb on - strand at 883.307 kb on - strand at 883.347 kb on + strand at 883.347 kb on + strand at 883.350 kb on - strand at 883.355 kb on - strand at 883.372 kb on - strand, within Atu3791 at 883.434 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.517 kb on - strand, within Atu3791 at 883.524 kb on - strand, within Atu3791 at 883.576 kb on - strand, within Atu3791 at 883.627 kb on + strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.677 kb on - strand, within Atu3791 at 883.784 kb on - strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.909 kb on + strand, within Atu3791 at 883.942 kb on + strand, within Atu3791 at 884.036 kb on - strand, within Atu3791 at 884.037 kb on + strand, within Atu3791 at 884.038 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.073 kb on - strand, within Atu3791 at 884.080 kb on - strand, within Atu3791 at 884.108 kb on - strand, within Atu3791 at 884.120 kb on + strand, within Atu3791 at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.205 kb on - strand at 884.205 kb on - strand at 884.224 kb on + strand at 884.224 kb on + strand at 884.275 kb on + strand at 884.280 kb on - strand at 884.407 kb on - strand, within Atu3792 at 884.532 kb on - strand, within Atu3792 at 884.552 kb on + strand, within Atu3792 at 884.572 kb on - strand, within Atu3792 at 884.625 kb on - strand, within Atu3792 at 884.743 kb on - strand, within Atu3792 at 884.778 kb on - strand, within Atu3792 at 884.810 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.842 kb on - strand, within Atu3792 at 884.922 kb on - strand, within Atu3792 at 884.937 kb on - strand, within Atu3792 at 884.986 kb on - strand, within Atu3792 at 885.134 kb on + strand, within Atu3792 at 885.151 kb on + strand, within Atu3792 at 885.154 kb on - strand, within Atu3792
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 882,269 - Atu3790 0.74 +0.2 882,319 + Atu3790 0.77 +0.5 882,319 + Atu3790 0.77 +0.1 882,332 - Atu3790 0.78 -0.3 882,428 + Atu3790 0.83 +0.3 882,488 - Atu3790 0.87 +0.0 882,510 + Atu3790 0.88 -0.1 882,525 + Atu3790 0.89 -0.3 882,550 - +0.5 882,558 + +0.1 882,558 + -0.5 882,560 - -0.7 882,566 - -0.3 882,654 - +0.6 882,654 - +0.1 882,712 + -0.2 882,712 - +0.1 882,784 + +0.1 882,848 + -0.1 882,911 + +0.1 882,919 - -0.7 882,919 - -0.3 882,919 - +0.8 882,945 + -0.3 882,953 - +0.4 882,968 + -0.2 882,987 + -0.8 883,116 + +0.3 883,161 + -0.8 883,231 - +0.0 883,307 - +1.1 883,347 + -0.2 883,347 + -0.1 883,350 - +0.5 883,355 - +0.2 883,372 - Atu3791 0.11 +0.4 883,434 - Atu3791 0.18 -0.1 883,489 - Atu3791 0.24 +0.0 883,489 - Atu3791 0.24 +0.6 883,517 - Atu3791 0.27 +0.6 883,524 - Atu3791 0.27 +0.2 883,576 - Atu3791 0.33 -0.1 883,627 + Atu3791 0.38 -0.1 883,635 - Atu3791 0.39 -0.5 883,635 - Atu3791 0.39 +0.1 883,677 - Atu3791 0.43 +0.3 883,784 - Atu3791 0.55 +0.1 883,885 + Atu3791 0.65 +0.7 883,885 + Atu3791 0.65 +0.5 883,909 + Atu3791 0.68 +0.5 883,942 + Atu3791 0.71 +1.2 884,036 - Atu3791 0.81 +0.1 884,037 + Atu3791 0.81 -0.0 884,038 + Atu3791 0.81 +0.9 884,065 + Atu3791 0.84 -0.4 884,065 + Atu3791 0.84 +0.3 884,065 + Atu3791 0.84 +0.7 884,073 - Atu3791 0.85 +0.1 884,080 - Atu3791 0.86 +1.0 884,108 - Atu3791 0.89 +0.4 884,120 + Atu3791 0.90 +0.3 884,197 + -0.3 884,197 + +0.2 884,197 + +0.5 884,197 + +0.3 884,205 - +0.2 884,205 - +0.1 884,224 + -0.4 884,224 + +0.2 884,275 + -0.4 884,280 - +0.3 884,407 - Atu3792 0.13 +0.3 884,532 - Atu3792 0.22 -0.5 884,552 + Atu3792 0.23 -0.4 884,572 - Atu3792 0.25 -1.4 884,625 - Atu3792 0.28 -0.4 884,743 - Atu3792 0.36 +2.9 884,778 - Atu3792 0.39 +0.1 884,810 - Atu3792 0.41 -0.3 884,837 - Atu3792 0.43 -0.0 884,837 - Atu3792 0.43 -0.3 884,842 - Atu3792 0.43 -0.7 884,922 - Atu3792 0.49 -0.3 884,937 - Atu3792 0.50 +0.2 884,986 - Atu3792 0.53 +0.1 885,134 + Atu3792 0.63 -0.3 885,151 + Atu3792 0.64 -0.3 885,154 - Atu3792 0.65 -0.6
Or see this region's nucleotide sequence