Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3749 and Atu3750 overlap by 4 nucleotides Atu3750 and Atu3751 are separated by 104 nucleotides Atu3751 and Atu3752 are separated by 102 nucleotides
Atu3749: Atu3749 - enhanced entry protein, at 833,035 to 834,147
Atu3749
Atu3750: Atu3750 - thiamine-phosphate pyrophosphorylase, at 834,144 to 834,797
Atu3750
Atu3751: Atu3751 - hypothetical protein, at 834,902 to 835,666
Atu3751
Atu3752: Atu3752 - hypothetical protein, at 835,769 to 835,945
Atu3752
Position (kb) 834
835 Strain fitness (log2 ratio) -1
0
1
2 at 834.206 kb on - strand at 834.222 kb on + strand, within Atu3750 at 834.285 kb on + strand, within Atu3750 at 834.503 kb on - strand, within Atu3750 at 834.536 kb on + strand, within Atu3750 at 834.550 kb on + strand, within Atu3750 at 834.563 kb on - strand, within Atu3750 at 834.764 kb on + strand at 834.767 kb on - strand at 834.788 kb on - strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.892 kb on + strand at 834.897 kb on + strand at 834.905 kb on - strand at 834.905 kb on - strand at 835.031 kb on + strand, within Atu3751 at 835.031 kb on + strand, within Atu3751 at 835.108 kb on - strand, within Atu3751 at 835.282 kb on - strand, within Atu3751 at 835.323 kb on + strand, within Atu3751 at 835.323 kb on + strand, within Atu3751 at 835.331 kb on - strand, within Atu3751 at 835.331 kb on - strand, within Atu3751 at 835.396 kb on + strand, within Atu3751 at 835.422 kb on - strand, within Atu3751 at 835.466 kb on - strand, within Atu3751 at 835.500 kb on + strand, within Atu3751 at 835.515 kb on - strand, within Atu3751 at 835.542 kb on + strand, within Atu3751 at 835.560 kb on + strand, within Atu3751 at 835.568 kb on - strand, within Atu3751 at 835.622 kb on - strand at 835.695 kb on + strand at 835.703 kb on - strand at 835.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 834,206 - -1.0 834,222 + Atu3750 0.12 -0.3 834,285 + Atu3750 0.22 -0.7 834,503 - Atu3750 0.55 +0.5 834,536 + Atu3750 0.60 +0.3 834,550 + Atu3750 0.62 +2.6 834,563 - Atu3750 0.64 +0.4 834,764 + +0.1 834,767 - -1.4 834,788 - +0.8 834,892 + +0.2 834,892 + +0.2 834,892 + -0.2 834,892 + -0.1 834,897 + -0.3 834,905 - +0.2 834,905 - -0.2 835,031 + Atu3751 0.17 +0.4 835,031 + Atu3751 0.17 +0.0 835,108 - Atu3751 0.27 -0.0 835,282 - Atu3751 0.50 +0.2 835,323 + Atu3751 0.55 +0.6 835,323 + Atu3751 0.55 -0.2 835,331 - Atu3751 0.56 +0.1 835,331 - Atu3751 0.56 -0.2 835,396 + Atu3751 0.65 -0.1 835,422 - Atu3751 0.68 -0.1 835,466 - Atu3751 0.74 -0.2 835,500 + Atu3751 0.78 -0.1 835,515 - Atu3751 0.80 +0.4 835,542 + Atu3751 0.84 +0.2 835,560 + Atu3751 0.86 -0.3 835,568 - Atu3751 0.87 +0.1 835,622 - -0.6 835,695 + +0.2 835,703 - +0.3 835,786 + -0.2
Or see this region's nucleotide sequence