Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3643 and Atu3644 are separated by 227 nucleotides Atu3644 and Atu3645 are separated by 118 nucleotides Atu3645 and Atu3646 overlap by 4 nucleotides Atu3646 and Atu3647 are separated by 130 nucleotides
Atu3643: Atu3643 - hypothetical protein, at 697,335 to 698,270
Atu3643
Atu3644: Atu3644 - hypothetical protein, at 698,498 to 698,953
Atu3644
Atu3645: Atu3645 - hypothetical protein, at 699,072 to 699,479
Atu3645
Atu3646: Atu3646 - hypothetical protein, at 699,476 to 699,901
Atu3646
Atu3647: Atu3647 - hypothetical protein, at 700,032 to 700,277
Atu3647
Position (kb) 699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.090 kb on - strand, within Atu3643 at 698.110 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.112 kb on + strand, within Atu3643 at 698.120 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.130 kb on - strand, within Atu3643 at 698.159 kb on - strand, within Atu3643 at 698.220 kb on - strand at 698.220 kb on - strand at 698.238 kb on - strand at 698.238 kb on - strand at 698.238 kb on - strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.264 kb on + strand at 698.272 kb on - strand at 698.272 kb on - strand at 698.272 kb on - strand at 698.274 kb on + strand at 698.358 kb on + strand at 698.385 kb on - strand at 698.521 kb on + strand at 698.797 kb on + strand, within Atu3644 at 698.864 kb on - strand, within Atu3644 at 698.868 kb on + strand, within Atu3644 at 698.868 kb on + strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.876 kb on - strand, within Atu3644 at 698.969 kb on + strand at 699.037 kb on + strand at 699.038 kb on + strand at 699.045 kb on - strand at 699.069 kb on - strand at 699.076 kb on - strand at 699.147 kb on + strand, within Atu3645 at 699.147 kb on + strand, within Atu3645 at 699.178 kb on + strand, within Atu3645 at 699.198 kb on + strand, within Atu3645 at 699.198 kb on - strand, within Atu3645 at 699.230 kb on + strand, within Atu3645 at 699.254 kb on - strand, within Atu3645 at 699.256 kb on + strand, within Atu3645 at 699.275 kb on + strand, within Atu3645 at 699.275 kb on + strand, within Atu3645 at 699.473 kb on + strand at 699.474 kb on - strand at 699.502 kb on - strand at 699.542 kb on - strand, within Atu3646 at 699.549 kb on + strand, within Atu3646 at 699.549 kb on + strand, within Atu3646 at 699.549 kb on + strand, within Atu3646 at 699.549 kb on + strand, within Atu3646 at 699.549 kb on + strand, within Atu3646 at 699.557 kb on - strand, within Atu3646 at 699.605 kb on + strand, within Atu3646 at 699.607 kb on - strand, within Atu3646 at 699.623 kb on - strand, within Atu3646 at 699.623 kb on - strand, within Atu3646 at 699.623 kb on - strand, within Atu3646 at 699.659 kb on + strand, within Atu3646 at 699.659 kb on + strand, within Atu3646 at 699.659 kb on + strand, within Atu3646 at 699.659 kb on + strand, within Atu3646 at 699.667 kb on - strand, within Atu3646 at 699.667 kb on - strand, within Atu3646 at 699.667 kb on - strand, within Atu3646 at 699.667 kb on - strand, within Atu3646 at 699.667 kb on - strand, within Atu3646 at 699.674 kb on + strand, within Atu3646 at 699.684 kb on + strand, within Atu3646 at 699.719 kb on + strand, within Atu3646 at 699.727 kb on - strand, within Atu3646 at 699.727 kb on - strand, within Atu3646 at 699.732 kb on - strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.776 kb on + strand, within Atu3646 at 699.784 kb on - strand, within Atu3646 at 699.784 kb on - strand, within Atu3646 at 699.870 kb on + strand at 699.938 kb on - strand at 699.938 kb on - strand at 699.940 kb on + strand at 699.940 kb on + strand at 699.948 kb on - strand at 699.948 kb on - strand at 699.955 kb on - strand at 700.001 kb on + strand at 700.032 kb on - strand at 700.060 kb on + strand, within Atu3647 at 700.089 kb on + strand, within Atu3647 at 700.096 kb on - strand, within Atu3647 at 700.097 kb on - strand, within Atu3647 at 700.192 kb on - strand, within Atu3647 at 700.212 kb on + strand, within Atu3647 at 700.218 kb on - strand, within Atu3647 at 700.297 kb on + strand at 700.361 kb on + strand at 700.361 kb on + strand at 700.429 kb on + strand at 700.462 kb on + strand at 700.470 kb on - strand at 700.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 698,090 - Atu3643 0.81 +1.5 698,110 + Atu3643 0.83 +0.1 698,112 + Atu3643 0.83 -0.6 698,112 + Atu3643 0.83 -0.6 698,120 - Atu3643 0.84 -1.0 698,130 - Atu3643 0.85 +0.4 698,130 - Atu3643 0.85 +0.0 698,159 - Atu3643 0.88 -0.0 698,220 - +0.2 698,220 - -1.6 698,238 - -0.8 698,238 - +0.7 698,238 - -0.3 698,264 + +0.3 698,264 + +0.5 698,264 + +0.6 698,264 + -0.3 698,272 - +0.0 698,272 - +0.5 698,272 - +0.8 698,274 + +0.7 698,358 + -0.1 698,385 - +0.3 698,521 + -1.4 698,797 + Atu3644 0.66 -0.2 698,864 - Atu3644 0.80 -1.8 698,868 + Atu3644 0.81 -1.0 698,868 + Atu3644 0.81 +0.5 698,876 - Atu3644 0.83 -0.2 698,876 - Atu3644 0.83 +0.3 698,876 - Atu3644 0.83 +0.2 698,969 + +0.6 699,037 + +0.3 699,038 + -0.2 699,045 - +0.1 699,069 - +1.2 699,076 - -0.1 699,147 + Atu3645 0.18 +0.0 699,147 + Atu3645 0.18 +0.1 699,178 + Atu3645 0.26 -0.3 699,198 + Atu3645 0.31 +0.3 699,198 - Atu3645 0.31 +1.4 699,230 + Atu3645 0.39 +0.1 699,254 - Atu3645 0.45 +0.2 699,256 + Atu3645 0.45 +0.5 699,275 + Atu3645 0.50 +0.4 699,275 + Atu3645 0.50 +0.4 699,473 + +0.1 699,474 - +0.8 699,502 - +0.4 699,542 - Atu3646 0.15 +0.1 699,549 + Atu3646 0.17 +0.5 699,549 + Atu3646 0.17 -0.0 699,549 + Atu3646 0.17 -0.2 699,549 + Atu3646 0.17 +0.6 699,549 + Atu3646 0.17 +1.2 699,557 - Atu3646 0.19 +0.4 699,605 + Atu3646 0.30 +0.1 699,607 - Atu3646 0.31 +0.2 699,623 - Atu3646 0.35 -1.2 699,623 - Atu3646 0.35 -0.1 699,623 - Atu3646 0.35 -0.6 699,659 + Atu3646 0.43 +0.2 699,659 + Atu3646 0.43 -0.1 699,659 + Atu3646 0.43 +0.3 699,659 + Atu3646 0.43 -0.3 699,667 - Atu3646 0.45 +0.2 699,667 - Atu3646 0.45 -0.8 699,667 - Atu3646 0.45 +0.4 699,667 - Atu3646 0.45 -0.3 699,667 - Atu3646 0.45 +0.3 699,674 + Atu3646 0.46 +0.5 699,684 + Atu3646 0.49 +0.8 699,719 + Atu3646 0.57 -0.2 699,727 - Atu3646 0.59 +0.1 699,727 - Atu3646 0.59 +0.0 699,732 - Atu3646 0.60 +0.4 699,776 + Atu3646 0.70 -1.2 699,776 + Atu3646 0.70 -0.5 699,776 + Atu3646 0.70 -0.1 699,784 - Atu3646 0.72 +2.2 699,784 - Atu3646 0.72 -0.0 699,870 + -1.5 699,938 - -0.1 699,938 - -0.6 699,940 + -0.1 699,940 + +0.1 699,948 - -0.0 699,948 - +0.4 699,955 - +0.3 700,001 + -0.1 700,032 - +1.0 700,060 + Atu3647 0.11 +0.8 700,089 + Atu3647 0.23 +0.3 700,096 - Atu3647 0.26 -0.1 700,097 - Atu3647 0.26 +1.4 700,192 - Atu3647 0.65 -0.1 700,212 + Atu3647 0.73 +0.1 700,218 - Atu3647 0.76 -0.2 700,297 + -0.2 700,361 + +0.9 700,361 + +0.1 700,429 + -0.3 700,462 + -0.0 700,470 - +0.6 700,479 + +0.2
Or see this region's nucleotide sequence