Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3516 and Atu3517 overlap by 4 nucleotides Atu3517 and Atu3518 are separated by 18 nucleotides Atu3518 and Atu3519 are separated by 92 nucleotides
Atu3516: Atu3516 - MutT family NTP pyrophosphatase, at 563,609 to 564,022
Atu3516
Atu3517: Atu3517 - acetyltransferase, at 564,019 to 564,795
Atu3517
Atu3518: Atu3518 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 564,814 to 566,055
Atu3518
Atu3519: Atu3519 - peptidyl-prolyl cis-trans isomerase, at 566,148 to 567,014
Atu3519
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -1
0
1
2 at 563.856 kb on - strand, within Atu3516 at 563.882 kb on - strand, within Atu3516 at 563.884 kb on + strand, within Atu3516 at 563.977 kb on + strand, within Atu3516 at 563.985 kb on - strand at 564.033 kb on + strand at 564.067 kb on - strand at 564.067 kb on - strand at 564.157 kb on + strand, within Atu3517 at 564.170 kb on - strand, within Atu3517 at 564.259 kb on + strand, within Atu3517 at 564.283 kb on - strand, within Atu3517 at 564.288 kb on - strand, within Atu3517 at 564.326 kb on + strand, within Atu3517 at 564.650 kb on - strand, within Atu3517 at 564.668 kb on - strand, within Atu3517 at 564.825 kb on - strand at 564.825 kb on - strand at 564.865 kb on + strand at 564.866 kb on + strand at 564.920 kb on - strand at 564.979 kb on + strand, within Atu3518 at 565.224 kb on + strand, within Atu3518 at 565.267 kb on + strand, within Atu3518 at 565.297 kb on - strand, within Atu3518 at 565.392 kb on - strand, within Atu3518 at 565.403 kb on - strand, within Atu3518 at 565.473 kb on - strand, within Atu3518 at 565.555 kb on + strand, within Atu3518 at 565.633 kb on - strand, within Atu3518 at 565.769 kb on + strand, within Atu3518 at 565.769 kb on + strand, within Atu3518 at 565.777 kb on - strand, within Atu3518 at 565.777 kb on - strand, within Atu3518 at 565.794 kb on - strand, within Atu3518 at 565.816 kb on - strand, within Atu3518 at 565.838 kb on - strand, within Atu3518 at 565.919 kb on + strand, within Atu3518 at 565.944 kb on - strand at 565.986 kb on + strand at 566.086 kb on + strand at 566.237 kb on - strand, within Atu3519 at 566.247 kb on - strand, within Atu3519 at 566.247 kb on - strand, within Atu3519 at 566.294 kb on - strand, within Atu3519 at 566.365 kb on - strand, within Atu3519 at 566.394 kb on - strand, within Atu3519 at 566.412 kb on + strand, within Atu3519 at 566.471 kb on - strand, within Atu3519 at 566.471 kb on - strand, within Atu3519 at 566.567 kb on + strand, within Atu3519 at 566.619 kb on - strand, within Atu3519 at 566.654 kb on - strand, within Atu3519 at 566.654 kb on - strand, within Atu3519 at 566.698 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.819 kb on - strand, within Atu3519 at 566.819 kb on - strand, within Atu3519 at 566.824 kb on + strand, within Atu3519 at 566.866 kb on + strand, within Atu3519 at 566.957 kb on + strand at 567.013 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 563,856 - Atu3516 0.60 +0.4 563,882 - Atu3516 0.66 -0.5 563,884 + Atu3516 0.66 +0.2 563,977 + Atu3516 0.89 -0.1 563,985 - +1.0 564,033 + +2.1 564,067 - -0.3 564,067 - +0.3 564,157 + Atu3517 0.18 -0.4 564,170 - Atu3517 0.19 +0.1 564,259 + Atu3517 0.31 -1.4 564,283 - Atu3517 0.34 +0.2 564,288 - Atu3517 0.35 -0.3 564,326 + Atu3517 0.40 -0.1 564,650 - Atu3517 0.81 -0.2 564,668 - Atu3517 0.84 -0.0 564,825 - +0.8 564,825 - +0.5 564,865 + +0.3 564,866 + +0.5 564,920 - +0.3 564,979 + Atu3518 0.13 +0.2 565,224 + Atu3518 0.33 +0.4 565,267 + Atu3518 0.36 +1.1 565,297 - Atu3518 0.39 -0.1 565,392 - Atu3518 0.47 +0.3 565,403 - Atu3518 0.47 +0.1 565,473 - Atu3518 0.53 +0.4 565,555 + Atu3518 0.60 +0.2 565,633 - Atu3518 0.66 +0.8 565,769 + Atu3518 0.77 +0.2 565,769 + Atu3518 0.77 +0.5 565,777 - Atu3518 0.78 +0.4 565,777 - Atu3518 0.78 +0.1 565,794 - Atu3518 0.79 -0.1 565,816 - Atu3518 0.81 +0.5 565,838 - Atu3518 0.82 +0.1 565,919 + Atu3518 0.89 +0.2 565,944 - +0.3 565,986 + +0.9 566,086 + +0.2 566,237 - Atu3519 0.10 +0.3 566,247 - Atu3519 0.11 +0.5 566,247 - Atu3519 0.11 +1.1 566,294 - Atu3519 0.17 -0.0 566,365 - Atu3519 0.25 +0.0 566,394 - Atu3519 0.28 +0.2 566,412 + Atu3519 0.30 +0.5 566,471 - Atu3519 0.37 +0.2 566,471 - Atu3519 0.37 +0.4 566,567 + Atu3519 0.48 +0.2 566,619 - Atu3519 0.54 +0.5 566,654 - Atu3519 0.58 +0.5 566,654 - Atu3519 0.58 +1.5 566,698 + Atu3519 0.63 +0.5 566,811 + Atu3519 0.76 +0.8 566,811 + Atu3519 0.76 +0.8 566,811 + Atu3519 0.76 +0.9 566,819 - Atu3519 0.77 -0.2 566,819 - Atu3519 0.77 -0.9 566,824 + Atu3519 0.78 -0.1 566,866 + Atu3519 0.83 +0.1 566,957 + +0.0 567,013 + -0.3
Or see this region's nucleotide sequence