Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3457 and Atu3458 are separated by 4 nucleotides Atu3458 and Atu3459 overlap by 1 nucleotides Atu3459 and Atu3460 are separated by 303 nucleotides Atu3460 and Atu3461 are separated by 27 nucleotides
Atu3457: Atu3457 - ABC transporter permease, at 505,415 to 506,251
Atu3457
Atu3458: Atu3458 - ABC transporter permease, at 506,256 to 507,143
Atu3458
Atu3459: Atu3459 - ABC transporter permease, at 507,143 to 508,165
Atu3459
Atu3460: Atu3460 - RhtB family transporter, at 508,469 to 509,101
Atu3460
Atu3461: Atu3461 - GntR family transcriptional regulator, at 509,129 to 509,857
Atu3461
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1 at 506.160 kb on - strand, within Atu3457 at 506.185 kb on + strand at 506.221 kb on + strand at 506.252 kb on + strand at 506.324 kb on + strand at 506.379 kb on - strand, within Atu3458 at 506.388 kb on - strand, within Atu3458 at 506.398 kb on - strand, within Atu3458 at 506.482 kb on + strand, within Atu3458 at 506.558 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.563 kb on - strand, within Atu3458 at 506.567 kb on + strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.574 kb on - strand, within Atu3458 at 506.597 kb on + strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.616 kb on - strand, within Atu3458 at 506.653 kb on - strand, within Atu3458 at 506.684 kb on + strand, within Atu3458 at 506.687 kb on - strand, within Atu3458 at 506.692 kb on - strand, within Atu3458 at 506.720 kb on + strand, within Atu3458 at 506.853 kb on + strand, within Atu3458 at 506.883 kb on - strand, within Atu3458 at 507.228 kb on + strand at 507.238 kb on - strand at 507.296 kb on + strand, within Atu3459 at 507.314 kb on - strand, within Atu3459 at 507.362 kb on + strand, within Atu3459 at 507.390 kb on + strand, within Atu3459 at 507.395 kb on + strand, within Atu3459 at 507.397 kb on + strand, within Atu3459 at 507.405 kb on - strand, within Atu3459 at 507.469 kb on + strand, within Atu3459 at 507.499 kb on - strand, within Atu3459 at 507.521 kb on - strand, within Atu3459 at 507.563 kb on - strand, within Atu3459 at 507.643 kb on - strand, within Atu3459 at 507.676 kb on - strand, within Atu3459 at 507.708 kb on + strand, within Atu3459 at 507.711 kb on - strand, within Atu3459 at 507.747 kb on - strand, within Atu3459 at 507.754 kb on + strand, within Atu3459 at 507.808 kb on - strand, within Atu3459 at 507.824 kb on + strand, within Atu3459 at 507.832 kb on - strand, within Atu3459 at 507.858 kb on + strand, within Atu3459 at 508.008 kb on - strand, within Atu3459 at 508.058 kb on + strand, within Atu3459 at 508.460 kb on - strand at 508.484 kb on + strand at 508.489 kb on + strand at 508.492 kb on - strand at 508.530 kb on + strand at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.538 kb on - strand, within Atu3460 at 508.597 kb on + strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.653 kb on - strand, within Atu3460 at 508.673 kb on + strand, within Atu3460 at 508.757 kb on - strand, within Atu3460 at 508.780 kb on + strand, within Atu3460 at 508.851 kb on - strand, within Atu3460 at 509.001 kb on - strand, within Atu3460 at 509.058 kb on + strand at 509.059 kb on - strand at 509.078 kb on - strand at 509.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 506,160 - Atu3457 0.89 +0.3 506,185 + -0.3 506,221 + -0.7 506,252 + +0.4 506,324 + +0.7 506,379 - Atu3458 0.14 +0.0 506,388 - Atu3458 0.15 +0.6 506,398 - Atu3458 0.16 +0.0 506,482 + Atu3458 0.25 -0.0 506,558 - Atu3458 0.34 +0.3 506,563 - Atu3458 0.35 +0.0 506,563 - Atu3458 0.35 +0.1 506,567 + Atu3458 0.35 +0.2 506,574 - Atu3458 0.36 -0.1 506,574 - Atu3458 0.36 -0.5 506,597 + Atu3458 0.38 +0.0 506,616 - Atu3458 0.41 +0.0 506,616 - Atu3458 0.41 -0.8 506,653 - Atu3458 0.45 -1.0 506,684 + Atu3458 0.48 +0.5 506,687 - Atu3458 0.49 -0.4 506,692 - Atu3458 0.49 -0.1 506,720 + Atu3458 0.52 -0.5 506,853 + Atu3458 0.67 -1.9 506,883 - Atu3458 0.71 -0.0 507,228 + +0.7 507,238 - -0.7 507,296 + Atu3459 0.15 -0.3 507,314 - Atu3459 0.17 -0.3 507,362 + Atu3459 0.21 -0.4 507,390 + Atu3459 0.24 -0.2 507,395 + Atu3459 0.25 +0.1 507,397 + Atu3459 0.25 -0.3 507,405 - Atu3459 0.26 +0.0 507,469 + Atu3459 0.32 +0.0 507,499 - Atu3459 0.35 -0.4 507,521 - Atu3459 0.37 -0.8 507,563 - Atu3459 0.41 +0.1 507,643 - Atu3459 0.49 -0.2 507,676 - Atu3459 0.52 +1.2 507,708 + Atu3459 0.55 -0.5 507,711 - Atu3459 0.56 -0.3 507,747 - Atu3459 0.59 -0.2 507,754 + Atu3459 0.60 +0.3 507,808 - Atu3459 0.65 +0.9 507,824 + Atu3459 0.67 -0.5 507,832 - Atu3459 0.67 +0.7 507,858 + Atu3459 0.70 +0.0 508,008 - Atu3459 0.85 +0.3 508,058 + Atu3459 0.89 +0.6 508,460 - -1.1 508,484 + -1.1 508,489 + -0.1 508,492 - -0.4 508,530 + +0.4 508,538 - Atu3460 0.11 +0.1 508,538 - Atu3460 0.11 +1.0 508,538 - Atu3460 0.11 +0.3 508,597 + Atu3460 0.20 -0.3 508,653 - Atu3460 0.29 -0.1 508,653 - Atu3460 0.29 -0.3 508,673 + Atu3460 0.32 -0.3 508,757 - Atu3460 0.45 -0.5 508,780 + Atu3460 0.49 -0.4 508,851 - Atu3460 0.60 -0.2 509,001 - Atu3460 0.84 +1.5 509,058 + +0.4 509,059 - -0.5 509,078 - +0.8 509,148 - -0.5
Or see this region's nucleotide sequence