Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3344 and Atu3345 overlap by 4 nucleotides Atu3345 and Atu3346 overlap by 1 nucleotides Atu3346 and Atu3347 are separated by 143 nucleotides
Atu3344: Atu3344 - radical activating protein, at 378,583 to 379,338
Atu3344
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Atu3347: Atu3347 - hypothetical protein, at 380,545 to 381,678
Atu3347
Position (kb) 379
380
381 Strain fitness (log2 ratio) -1
0
1
2 at 378.696 kb on - strand, within Atu3344 at 378.712 kb on - strand, within Atu3344 at 378.764 kb on - strand, within Atu3344 at 378.857 kb on - strand, within Atu3344 at 378.880 kb on + strand, within Atu3344 at 378.882 kb on + strand, within Atu3344 at 379.006 kb on + strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.014 kb on - strand, within Atu3344 at 379.110 kb on - strand, within Atu3344 at 379.161 kb on - strand, within Atu3344 at 379.189 kb on - strand, within Atu3344 at 379.287 kb on - strand at 379.321 kb on - strand at 379.365 kb on - strand at 379.462 kb on - strand, within Atu3345 at 379.542 kb on + strand, within Atu3345 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346 at 380.379 kb on + strand at 380.441 kb on + strand at 380.535 kb on + strand at 380.638 kb on + strand at 380.666 kb on - strand, within Atu3347 at 380.684 kb on + strand, within Atu3347 at 380.697 kb on - strand, within Atu3347 at 380.752 kb on - strand, within Atu3347 at 380.767 kb on + strand, within Atu3347 at 380.893 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.948 kb on - strand, within Atu3347 at 381.196 kb on - strand, within Atu3347 at 381.242 kb on - strand, within Atu3347 at 381.254 kb on + strand, within Atu3347 at 381.262 kb on - strand, within Atu3347 at 381.272 kb on - strand, within Atu3347
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 378,696 - Atu3344 0.15 +0.3 378,712 - Atu3344 0.17 +0.6 378,764 - Atu3344 0.24 -0.5 378,857 - Atu3344 0.36 -0.1 378,880 + Atu3344 0.39 -0.8 378,882 + Atu3344 0.40 -0.2 379,006 + Atu3344 0.56 -0.6 379,014 - Atu3344 0.57 +0.2 379,014 - Atu3344 0.57 -0.5 379,014 - Atu3344 0.57 +0.2 379,110 - Atu3344 0.70 +0.2 379,161 - Atu3344 0.76 +0.3 379,189 - Atu3344 0.80 +1.0 379,287 - +0.4 379,321 - -0.3 379,365 - -0.0 379,462 - Atu3345 0.36 -0.1 379,542 + Atu3345 0.58 +0.3 379,595 + Atu3345 0.73 +0.2 379,639 + Atu3345 0.85 +0.0 379,710 + +0.2 379,710 + -1.2 379,710 + +0.1 379,718 - +0.1 379,718 - -0.4 379,718 - -0.5 379,723 - -0.3 379,923 - Atu3346 0.33 +0.1 379,923 - Atu3346 0.33 -0.3 379,936 + Atu3346 0.34 +0.1 379,944 - Atu3346 0.36 +0.6 379,960 - Atu3346 0.38 +0.6 379,967 + Atu3346 0.39 +0.2 379,992 + Atu3346 0.42 +0.6 380,080 + Atu3346 0.55 +0.6 380,201 - Atu3346 0.72 +0.3 380,326 - Atu3346 0.89 -0.3 380,379 + +0.5 380,441 + -0.3 380,535 + +0.1 380,638 + -0.0 380,666 - Atu3347 0.11 +2.0 380,684 + Atu3347 0.12 -0.4 380,697 - Atu3347 0.13 +0.2 380,752 - Atu3347 0.18 -0.6 380,767 + Atu3347 0.20 +0.0 380,893 + Atu3347 0.31 +0.8 380,940 + Atu3347 0.35 +0.4 380,940 + Atu3347 0.35 -0.0 380,948 - Atu3347 0.36 +0.2 381,196 - Atu3347 0.57 -0.2 381,242 - Atu3347 0.61 +1.1 381,254 + Atu3347 0.63 +0.0 381,262 - Atu3347 0.63 -0.2 381,272 - Atu3347 0.64 +0.2
Or see this region's nucleotide sequence