Strain Fitness in Agrobacterium fabrum C58 around Atu3068

Experiment: 4-Hydroxybenzoic Acid 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3066 and Atu3067 are separated by 24 nucleotidesAtu3067 and Atu3068 are separated by 9 nucleotidesAtu3068 and Atu3069 are separated by 24 nucleotidesAtu3069 and Atu3070 are separated by 14 nucleotides Atu3066: Atu3066 - resiniferatoxin-binding, phosphotriesterase-like protein, at 68,733 to 69,800 Atu3066 Atu3067: Atu3067 - hypothetical protein, at 69,825 to 70,595 Atu3067 Atu3068: Atu3068 - ribokinase, at 70,605 to 71,501 Atu3068 Atu3069: Atu3069 - hypothetical protein, at 71,526 to 72,368 Atu3069 Atu3070: Atu3070 - allantoate amidohydrolase, at 72,383 to 73,624 Atu3070 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1at 69.878 kb on + strandat 69.910 kb on + strand, within Atu3067at 69.910 kb on + strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.918 kb on - strand, within Atu3067at 69.935 kb on + strand, within Atu3067at 69.945 kb on + strand, within Atu3067at 70.012 kb on + strand, within Atu3067at 70.108 kb on - strand, within Atu3067at 70.130 kb on + strand, within Atu3067at 70.163 kb on + strand, within Atu3067at 70.178 kb on + strand, within Atu3067at 70.194 kb on - strand, within Atu3067at 70.366 kb on + strand, within Atu3067at 70.369 kb on - strand, within Atu3067at 70.467 kb on + strand, within Atu3067at 70.603 kb on + strandat 70.603 kb on + strandat 70.603 kb on + strandat 70.626 kb on + strandat 70.637 kb on - strandat 70.655 kb on - strandat 70.744 kb on - strand, within Atu3068at 70.786 kb on + strand, within Atu3068at 70.851 kb on + strand, within Atu3068at 70.854 kb on - strand, within Atu3068at 70.933 kb on + strand, within Atu3068at 70.940 kb on + strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 70.953 kb on - strand, within Atu3068at 71.017 kb on + strand, within Atu3068at 71.025 kb on - strand, within Atu3068at 71.099 kb on + strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.144 kb on - strand, within Atu3068at 71.258 kb on + strand, within Atu3068at 71.303 kb on - strand, within Atu3068at 71.331 kb on + strand, within Atu3068at 71.442 kb on - strandat 71.460 kb on + strandat 71.526 kb on - strandat 71.667 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.736 kb on + strand, within Atu3069at 71.781 kb on + strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.789 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.901 kb on - strand, within Atu3069at 71.930 kb on - strand, within Atu3069at 71.991 kb on + strand, within Atu3069at 71.993 kb on + strand, within Atu3069at 71.998 kb on + strand, within Atu3069at 72.003 kb on + strand, within Atu3069at 72.053 kb on - strand, within Atu3069at 72.066 kb on - strand, within Atu3069at 72.208 kb on + strand, within Atu3069at 72.259 kb on - strand, within Atu3069at 72.261 kb on + strand, within Atu3069at 72.289 kb on - strandat 72.306 kb on - strandat 72.371 kb on - strandat 72.432 kb on + strandat 72.440 kb on - strandat 72.450 kb on - strandat 72.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM
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69,878 + +0.2
69,910 + Atu3067 0.11 +0.6
69,910 + Atu3067 0.11 +0.2
69,918 - Atu3067 0.12 -1.0
69,918 - Atu3067 0.12 +0.1
69,935 + Atu3067 0.14 -0.1
69,945 + Atu3067 0.16 +0.8
70,012 + Atu3067 0.24 +0.9
70,108 - Atu3067 0.37 +0.3
70,130 + Atu3067 0.40 -0.4
70,163 + Atu3067 0.44 -0.7
70,178 + Atu3067 0.46 -0.7
70,194 - Atu3067 0.48 +1.1
70,366 + Atu3067 0.70 +0.6
70,369 - Atu3067 0.71 +0.9
70,467 + Atu3067 0.83 +0.1
70,603 + +0.5
70,603 + -0.5
70,603 + -0.7
70,626 + +0.3
70,637 - +0.0
70,655 - +0.0
70,744 - Atu3068 0.15 +0.1
70,786 + Atu3068 0.20 +0.9
70,851 + Atu3068 0.27 +0.4
70,854 - Atu3068 0.28 -0.5
70,933 + Atu3068 0.37 +0.2
70,940 + Atu3068 0.37 -0.1
70,953 - Atu3068 0.39 +0.6
70,953 - Atu3068 0.39 +0.2
71,017 + Atu3068 0.46 -0.1
71,025 - Atu3068 0.47 -0.1
71,099 + Atu3068 0.55 +0.5
71,144 - Atu3068 0.60 +1.1
71,144 - Atu3068 0.60 +0.0
71,258 + Atu3068 0.73 +0.4
71,303 - Atu3068 0.78 +1.2
71,331 + Atu3068 0.81 +0.2
71,442 - +0.1
71,460 + +0.4
71,526 - +0.9
71,667 + Atu3069 0.17 -0.1
71,736 + Atu3069 0.25 +0.1
71,736 + Atu3069 0.25 +1.1
71,736 + Atu3069 0.25 -0.5
71,781 + Atu3069 0.30 -0.5
71,789 - Atu3069 0.31 +0.4
71,789 - Atu3069 0.31 +0.5
71,901 - Atu3069 0.44 -0.3
71,901 - Atu3069 0.44 +0.1
71,930 - Atu3069 0.48 +0.2
71,991 + Atu3069 0.55 +0.4
71,993 + Atu3069 0.55 -0.5
71,998 + Atu3069 0.56 +0.0
72,003 + Atu3069 0.57 -0.1
72,053 - Atu3069 0.63 +0.2
72,066 - Atu3069 0.64 -0.4
72,208 + Atu3069 0.81 -0.1
72,259 - Atu3069 0.87 +0.3
72,261 + Atu3069 0.87 +1.1
72,289 - -0.3
72,306 - +0.9
72,371 - +0.3
72,432 + +0.2
72,440 - -0.3
72,450 - -0.6
72,493 + +0.3

Or see this region's nucleotide sequence