Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3061 and Atu3062 are separated by 238 nucleotides Atu3062 and Atu3063 are separated by 32 nucleotides Atu3063 and Atu3064 overlap by 4 nucleotides
Atu3061: Atu3061 - diguanylate cyclase, at 62,905 to 64,674
Atu3061
Atu3062: Atu3062 - LacI family transcriptional regulator, at 64,913 to 65,941
Atu3062
Atu3063: Atu3063 - ABC transporter permease, at 65,974 to 66,927
Atu3063
Atu3064: Atu3064 - ABC transporter permease, at 66,924 to 67,727
Atu3064
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 63.939 kb on - strand, within Atu3061 at 64.020 kb on + strand, within Atu3061 at 64.179 kb on - strand, within Atu3061 at 64.245 kb on - strand, within Atu3061 at 64.450 kb on + strand, within Atu3061 at 64.469 kb on + strand, within Atu3061 at 64.507 kb on + strand at 64.507 kb on + strand at 64.582 kb on + strand at 64.625 kb on + strand at 64.730 kb on + strand at 64.812 kb on + strand at 64.908 kb on + strand at 64.956 kb on + strand at 65.056 kb on + strand, within Atu3062 at 65.193 kb on + strand, within Atu3062 at 65.201 kb on - strand, within Atu3062 at 65.287 kb on - strand, within Atu3062 at 65.310 kb on - strand, within Atu3062 at 65.403 kb on + strand, within Atu3062 at 65.411 kb on - strand, within Atu3062 at 65.454 kb on - strand, within Atu3062 at 65.496 kb on + strand, within Atu3062 at 65.504 kb on - strand, within Atu3062 at 65.557 kb on + strand, within Atu3062 at 65.694 kb on - strand, within Atu3062 at 65.701 kb on + strand, within Atu3062 at 65.709 kb on - strand, within Atu3062 at 65.709 kb on - strand, within Atu3062 at 66.049 kb on + strand at 66.049 kb on + strand at 66.182 kb on - strand, within Atu3063 at 66.199 kb on + strand, within Atu3063 at 66.199 kb on + strand, within Atu3063 at 66.199 kb on + strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.207 kb on - strand, within Atu3063 at 66.251 kb on - strand, within Atu3063 at 66.381 kb on + strand, within Atu3063 at 66.456 kb on - strand, within Atu3063 at 66.477 kb on - strand, within Atu3063 at 66.571 kb on + strand, within Atu3063 at 66.801 kb on - strand, within Atu3063 at 66.881 kb on - strand at 66.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 63,939 - Atu3061 0.58 +0.1 64,020 + Atu3061 0.63 -0.1 64,179 - Atu3061 0.72 +1.1 64,245 - Atu3061 0.76 -0.0 64,450 + Atu3061 0.87 +0.1 64,469 + Atu3061 0.88 -0.0 64,507 + +0.1 64,507 + -0.8 64,582 + +0.3 64,625 + +0.2 64,730 + +0.6 64,812 + -0.5 64,908 + +0.6 64,956 + +0.6 65,056 + Atu3062 0.14 +0.9 65,193 + Atu3062 0.27 +0.3 65,201 - Atu3062 0.28 -0.3 65,287 - Atu3062 0.36 +0.8 65,310 - Atu3062 0.39 -0.0 65,403 + Atu3062 0.48 -0.1 65,411 - Atu3062 0.48 +0.6 65,454 - Atu3062 0.53 +0.3 65,496 + Atu3062 0.57 -0.3 65,504 - Atu3062 0.57 +0.3 65,557 + Atu3062 0.63 -0.1 65,694 - Atu3062 0.76 +0.4 65,701 + Atu3062 0.77 +0.4 65,709 - Atu3062 0.77 +0.9 65,709 - Atu3062 0.77 +0.7 66,049 + +0.3 66,049 + +0.0 66,182 - Atu3063 0.22 +0.5 66,199 + Atu3063 0.24 -0.0 66,199 + Atu3063 0.24 -0.1 66,199 + Atu3063 0.24 +0.1 66,207 - Atu3063 0.24 +0.1 66,207 - Atu3063 0.24 +0.4 66,207 - Atu3063 0.24 +0.1 66,207 - Atu3063 0.24 +1.3 66,207 - Atu3063 0.24 -0.6 66,207 - Atu3063 0.24 -0.8 66,251 - Atu3063 0.29 -0.9 66,381 + Atu3063 0.43 +0.1 66,456 - Atu3063 0.51 -0.0 66,477 - Atu3063 0.53 +1.0 66,571 + Atu3063 0.63 +0.9 66,801 - Atu3063 0.87 -1.1 66,881 - -1.7 66,939 - -0.0
Or see this region's nucleotide sequence