Strain Fitness in Agrobacterium fabrum C58 around Atu2402

Experiment: 4-Hydroxybenzoic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid 5 mM
2,373,740	+		Atu2401	0.43	+0.6
2,373,751	+		Atu2401	0.43	-0.2
2,373,756	+		Atu2401	0.43	-0.0
2,373,778	+		Atu2401	0.45	+0.8
2,373,786	-		Atu2401	0.45	+0.8
2,373,803	-		Atu2401	0.46	-0.1
2,373,806	+		Atu2401	0.46	-0.3
2,373,806	+		Atu2401	0.46	-0.1
2,373,806	+		Atu2401	0.46	+0.2
2,373,806	+		Atu2401	0.46	+0.0
2,373,806	+		Atu2401	0.46	-0.0
2,373,814	-		Atu2401	0.47	-0.1
2,373,854	+		Atu2401	0.49	+0.3
2,373,862	-		Atu2401	0.50	-1.0
2,373,896	+		Atu2401	0.52	+0.1
2,373,915	+		Atu2401	0.53	-0.2
2,373,917	-		Atu2401	0.53	-0.6
2,373,925	+		Atu2401	0.53	-0.7
2,373,980	+		Atu2401	0.57	+0.1
2,373,986	+		Atu2401	0.57	-1.0
2,373,988	-		Atu2401	0.57	+0.1
2,374,179	-		Atu2401	0.68	+0.0
2,374,291	-		Atu2401	0.75	-0.0
2,374,398	-		Atu2401	0.81	-0.3
2,374,414	-		Atu2401	0.82	-0.4
2,374,504	+		Atu2401	0.87	+0.0
2,374,546	+		Atu2401	0.90	-0.6
2,374,546	+		Atu2401	0.90	-0.1
2,374,546	+		Atu2401	0.90	-0.3
2,374,546	+		Atu2401	0.90	+0.0
2,374,554	-				+0.3
2,374,698	-				+0.9
2,374,718	+				-0.4
2,374,732	-				+0.0
2,374,926	+		Atu2402	0.32	+0.6
2,374,939	+		Atu2402	0.34	-0.2
2,375,002	-		Atu2402	0.44	+0.2
2,375,085	-		Atu2402	0.57	+0.5
2,375,085	-		Atu2402	0.57	+0.5
2,375,085	-		Atu2402	0.57	+0.4
2,375,164	-		Atu2402	0.69	+0.2
2,375,171	+		Atu2402	0.70	+0.4
2,375,197	-		Atu2402	0.75	+0.2
2,375,228	-		Atu2402	0.80	+0.2
2,375,234	+		Atu2402	0.80	-0.3
2,375,365	+				-0.2
2,375,755	-				+0.1
2,375,859	+		Atu2404	0.15	-0.1
2,375,859	+		Atu2404	0.15	+0.4
2,375,899	+		Atu2404	0.26	-0.8
2,375,923	+		Atu2404	0.33	-0.0
2,375,931	-		Atu2404	0.35	-0.0
2,376,030	+		Atu2404	0.63	-0.1
2,376,030	+		Atu2404	0.63	+0.1
2,376,071	+		Atu2404	0.74	+0.1