Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0924 and Atu0925 are separated by 20 nucleotides Atu0925 and Atu0926 overlap by 8 nucleotides Atu0926 and Atu0927 are separated by 123 nucleotides
Atu0924: Atu0924 - hypothetical protein, at 913,430 to 913,624
Atu0924
Atu0925: Atu0925 - hypothetical protein, at 913,645 to 914,193
Atu0925
Atu0926: Atu0926 - hypothetical protein, at 914,186 to 914,773
Atu0926
Atu0927: Atu0927 - LysE family transporter, at 914,897 to 915,505
Atu0927
Position (kb) 914
915 Strain fitness (log2 ratio) -1
0
1
2 at 913.213 kb on + strand at 913.332 kb on + strand at 913.340 kb on - strand at 913.344 kb on + strand at 913.344 kb on + strand at 913.381 kb on - strand at 913.381 kb on - strand at 913.432 kb on - strand at 913.528 kb on + strand, within Atu0924 at 913.528 kb on - strand, within Atu0924 at 913.596 kb on - strand, within Atu0924 at 913.610 kb on + strand at 913.656 kb on + strand at 913.775 kb on + strand, within Atu0925 at 913.785 kb on + strand, within Atu0925 at 913.865 kb on - strand, within Atu0925 at 913.900 kb on - strand, within Atu0925 at 914.086 kb on + strand, within Atu0925 at 914.185 kb on - strand at 914.247 kb on - strand, within Atu0926 at 914.380 kb on - strand, within Atu0926 at 914.427 kb on + strand, within Atu0926 at 914.435 kb on - strand, within Atu0926 at 914.531 kb on + strand, within Atu0926 at 914.554 kb on + strand, within Atu0926 at 914.576 kb on - strand, within Atu0926 at 914.605 kb on - strand, within Atu0926 at 914.842 kb on + strand at 914.852 kb on + strand at 914.904 kb on + strand at 914.912 kb on - strand at 914.933 kb on - strand at 914.971 kb on - strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.009 kb on + strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.017 kb on - strand, within Atu0927 at 915.112 kb on - strand, within Atu0927 at 915.201 kb on + strand, within Atu0927 at 915.219 kb on + strand, within Atu0927 at 915.222 kb on - strand, within Atu0927 at 915.227 kb on - strand, within Atu0927 at 915.229 kb on + strand, within Atu0927 at 915.356 kb on - strand, within Atu0927 at 915.362 kb on + strand, within Atu0927 at 915.600 kb on - strand at 915.690 kb on - strand at 915.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 913,213 + -0.6 913,332 + -0.3 913,340 - +0.0 913,344 + -0.2 913,344 + +0.1 913,381 - +1.1 913,381 - -0.2 913,432 - -0.5 913,528 + Atu0924 0.50 +0.1 913,528 - Atu0924 0.50 -0.0 913,596 - Atu0924 0.85 +0.9 913,610 + +0.6 913,656 + -0.2 913,775 + Atu0925 0.24 -0.7 913,785 + Atu0925 0.26 -0.0 913,865 - Atu0925 0.40 +0.3 913,900 - Atu0925 0.46 +2.1 914,086 + Atu0925 0.80 -0.7 914,185 - +0.0 914,247 - Atu0926 0.10 +0.1 914,380 - Atu0926 0.33 -0.0 914,427 + Atu0926 0.41 +0.6 914,435 - Atu0926 0.42 +0.7 914,531 + Atu0926 0.59 -0.6 914,554 + Atu0926 0.63 -0.0 914,576 - Atu0926 0.66 +0.5 914,605 - Atu0926 0.71 -0.0 914,842 + -1.1 914,852 + -0.6 914,904 + +0.0 914,912 - -0.2 914,933 - +0.3 914,971 - Atu0927 0.12 -0.0 915,009 + Atu0927 0.18 -0.1 915,009 + Atu0927 0.18 -0.3 915,009 + Atu0927 0.18 -0.0 915,017 - Atu0927 0.20 -0.0 915,017 - Atu0927 0.20 +0.7 915,017 - Atu0927 0.20 +0.1 915,112 - Atu0927 0.35 +0.6 915,201 + Atu0927 0.50 -0.3 915,219 + Atu0927 0.53 -0.1 915,222 - Atu0927 0.53 -1.0 915,227 - Atu0927 0.54 -0.1 915,229 + Atu0927 0.55 -0.0 915,356 - Atu0927 0.75 +0.5 915,362 + Atu0927 0.76 +0.4 915,600 - +1.5 915,690 - -0.2 915,692 - +0.4
Or see this region's nucleotide sequence