Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0510 and Atu0511 overlap by 1 nucleotides Atu0511 and Atu8131 overlap by 1 nucleotides
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Atu0511: Atu0511 - pH adaption potassium efflux system protein, at 499,889 to 500,224
Atu0511
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Position (kb) 499
500
501 Strain fitness (log2 ratio) -1
0
1 at 499.122 kb on - strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.277 kb on + strand, within Atu0510 at 499.288 kb on + strand, within Atu0510 at 499.296 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.322 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.371 kb on + strand, within Atu0510 at 499.377 kb on - strand, within Atu0510 at 499.615 kb on - strand, within Atu0510 at 499.652 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.761 kb on + strand at 499.924 kb on + strand, within Atu0511 at 499.928 kb on - strand, within Atu0511 at 499.932 kb on - strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.966 kb on - strand, within Atu0511 at 500.014 kb on + strand, within Atu0511 at 500.029 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.151 kb on - strand, within Atu0511 at 500.444 kb on - strand at 500.470 kb on - strand at 500.514 kb on + strand at 500.626 kb on + strand, within Atu8131 at 500.705 kb on + strand, within Atu8131 at 500.814 kb on - strand, within Atu8131 at 500.838 kb on - strand, within Atu8131 at 501.011 kb on - strand, within Atu8131 at 501.025 kb on + strand, within Atu8131 at 501.045 kb on - strand, within Atu8131 at 501.103 kb on + strand, within Atu8131
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 499,122 - Atu0510 0.53 -0.0 499,255 + Atu0510 0.61 +1.2 499,255 + Atu0510 0.61 +0.8 499,277 + Atu0510 0.63 +0.3 499,288 + Atu0510 0.63 +0.5 499,296 - Atu0510 0.64 +0.9 499,320 - Atu0510 0.65 +1.2 499,320 - Atu0510 0.65 -0.3 499,322 + Atu0510 0.65 +0.3 499,369 + Atu0510 0.68 -0.1 499,369 + Atu0510 0.68 -0.4 499,371 + Atu0510 0.68 +0.3 499,377 - Atu0510 0.69 +0.2 499,615 - Atu0510 0.83 -0.0 499,652 - Atu0510 0.86 +0.5 499,681 - Atu0510 0.87 +0.2 499,681 - Atu0510 0.87 +1.1 499,761 + +0.4 499,924 + Atu0511 0.10 +1.7 499,928 - Atu0511 0.12 -0.2 499,932 - Atu0511 0.13 +0.4 499,953 + Atu0511 0.19 +1.4 499,953 + Atu0511 0.19 +0.5 499,961 - Atu0511 0.21 +0.1 499,961 - Atu0511 0.21 -0.0 499,966 - Atu0511 0.23 +0.2 500,014 + Atu0511 0.37 +0.2 500,029 + Atu0511 0.42 +0.2 500,112 + Atu0511 0.66 +0.1 500,112 + Atu0511 0.66 +0.1 500,151 - Atu0511 0.78 +0.3 500,444 - +0.4 500,470 - -0.2 500,514 + +0.1 500,626 + Atu8131 0.14 +0.0 500,705 + Atu8131 0.16 +0.7 500,814 - Atu8131 0.20 +1.2 500,838 - Atu8131 0.21 +0.2 501,011 - Atu8131 0.27 +0.2 501,025 + Atu8131 0.27 +1.1 501,045 - Atu8131 0.28 +0.7 501,103 + Atu8131 0.30 +0.6
Or see this region's nucleotide sequence