Experiment: 4-Hydroxybenzoic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0133 and Atu0134 overlap by 8 nucleotides Atu0134 and Atu0135 are separated by 119 nucleotides Atu0135 and Atu0136 are separated by 95 nucleotides
Atu0133: Atu0133 - thymidine phosphorylase, at 136,629 to 137,945
Atu0133
Atu0134: Atu0134 - hypothetical protein, at 137,938 to 138,474
Atu0134
Atu0135: Atu0135 - uracil phosphoribosyltransferase, at 138,594 to 139,223
Atu0135
Atu0136: Atu0136 - adenosine deaminase, at 139,319 to 140,296
Atu0136
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1 at 137.032 kb on + strand, within Atu0133 at 137.123 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.263 kb on + strand, within Atu0133 at 137.334 kb on + strand, within Atu0133 at 137.419 kb on + strand, within Atu0133 at 137.436 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.451 kb on + strand, within Atu0133 at 137.530 kb on - strand, within Atu0133 at 137.661 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.794 kb on + strand, within Atu0133 at 137.804 kb on + strand, within Atu0133 at 137.808 kb on - strand, within Atu0133 at 137.808 kb on - strand, within Atu0133 at 137.810 kb on - strand, within Atu0133 at 137.838 kb on + strand at 137.864 kb on + strand at 137.892 kb on - strand at 138.088 kb on + strand, within Atu0134 at 138.112 kb on + strand, within Atu0134 at 138.164 kb on + strand, within Atu0134 at 138.299 kb on + strand, within Atu0134 at 138.475 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.482 kb on + strand at 138.483 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.490 kb on - strand at 138.580 kb on - strand at 138.983 kb on - strand, within Atu0135 at 139.089 kb on + strand, within Atu0135 at 139.306 kb on + strand at 139.335 kb on + strand at 139.426 kb on - strand, within Atu0136 at 139.452 kb on - strand, within Atu0136
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid 5 mM remove 137,032 + Atu0133 0.31 +0.6 137,123 + Atu0133 0.38 -0.8 137,263 + Atu0133 0.48 +0.1 137,263 + Atu0133 0.48 +1.4 137,334 + Atu0133 0.54 +0.2 137,419 + Atu0133 0.60 -0.2 137,436 + Atu0133 0.61 -0.6 137,451 + Atu0133 0.62 -0.3 137,451 + Atu0133 0.62 +0.2 137,530 - Atu0133 0.68 -0.2 137,661 + Atu0133 0.78 -0.1 137,794 + Atu0133 0.88 -0.2 137,794 + Atu0133 0.88 +0.1 137,794 + Atu0133 0.88 -0.2 137,794 + Atu0133 0.88 +0.2 137,804 + Atu0133 0.89 +0.1 137,808 - Atu0133 0.90 +0.2 137,808 - Atu0133 0.90 -0.3 137,810 - Atu0133 0.90 +0.0 137,838 + -0.6 137,864 + -0.1 137,892 - +1.0 138,088 + Atu0134 0.28 +0.2 138,112 + Atu0134 0.32 +0.5 138,164 + Atu0134 0.42 +0.2 138,299 + Atu0134 0.67 +1.0 138,475 + -0.1 138,482 + -0.0 138,482 + -0.1 138,482 + +0.2 138,482 + +0.0 138,482 + +0.3 138,482 + -0.4 138,483 - +0.3 138,490 - +0.0 138,490 - -0.3 138,490 - -2.1 138,490 - +0.4 138,490 - +0.2 138,490 - +0.1 138,580 - -1.2 138,983 - Atu0135 0.62 -0.0 139,089 + Atu0135 0.79 +0.6 139,306 + -0.1 139,335 + -0.3 139,426 - Atu0136 0.11 -0.5 139,452 - Atu0136 0.14 -0.5
Or see this region's nucleotide sequence