Strain Fitness in Pseudomonas putida KT2440 around PP_4041

Experiment: carbon source 4-vinylphenol 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4039 and PP_4040 are separated by 97 nucleotidesPP_4040 and PP_4041 are separated by 66 nucleotidesPP_4041 and PP_4042 are separated by 65 nucleotides PP_4039: PP_4039 - transcriptional regulator, TetR family, at 4,552,087 to 4,552,608 _4039 PP_4040: PP_4040 - putative enzyme of the glyoxalase family, at 4,552,706 to 4,553,062 _4040 PP_4041: PP_4041 - putative glycoside hydrolase, at 4,553,129 to 4,554,925 _4041 PP_4042: PP_4042 - glucose-6-phosphate 1-dehydrogenase, at 4,554,991 to 4,556,496 _4042 Position (kb) 4553 4554 4555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4552.211 kb on + strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.212 kb on - strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.236 kb on + strand, within PP_4039at 4552.237 kb on - strand, within PP_4039at 4552.237 kb on - strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strand, within PP_4039at 4552.238 kb on + strandat 4552.238 kb on + strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.239 kb on - strand, within PP_4039at 4552.269 kb on + strand, within PP_4039at 4552.269 kb on + strand, within PP_4039at 4552.439 kb on + strand, within PP_4039at 4552.556 kb on + strandat 4552.556 kb on + strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.557 kb on - strandat 4552.560 kb on - strandat 4552.560 kb on - strandat 4552.670 kb on + strandat 4552.854 kb on + strand, within PP_4040at 4552.855 kb on - strand, within PP_4040at 4552.938 kb on + strand, within PP_4040at 4552.939 kb on - strand, within PP_4040at 4552.973 kb on + strand, within PP_4040at 4552.974 kb on - strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.983 kb on + strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4552.984 kb on - strand, within PP_4040at 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.064 kb on + strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.065 kb on - strandat 4553.091 kb on + strandat 4553.091 kb on + strandat 4553.091 kb on + strandat 4553.092 kb on - strandat 4553.096 kb on + strandat 4553.201 kb on + strandat 4553.201 kb on + strandat 4553.202 kb on - strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.256 kb on + strandat 4553.308 kb on - strandat 4553.308 kb on - strandat 4553.346 kb on + strand, within PP_4041at 4553.347 kb on - strand, within PP_4041at 4553.347 kb on - strand, within PP_4041at 4553.427 kb on + strand, within PP_4041at 4553.562 kb on + strand, within PP_4041at 4553.562 kb on + strand, within PP_4041at 4553.563 kb on - strand, within PP_4041at 4553.791 kb on + strand, within PP_4041at 4553.791 kb on + strand, within PP_4041at 4553.792 kb on - strand, within PP_4041at 4553.792 kb on - strand, within PP_4041at 4553.802 kb on + strand, within PP_4041at 4553.803 kb on - strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.810 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.895 kb on + strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.896 kb on - strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strandat 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.982 kb on + strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4553.983 kb on - strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.015 kb on + strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.016 kb on - strand, within PP_4041at 4554.040 kb on + strand, within PP_4041at 4554.093 kb on + strand, within PP_4041at 4554.094 kb on - strandat 4554.153 kb on + strand, within PP_4041at 4554.153 kb on + strand, within PP_4041at 4554.154 kb on - strand, within PP_4041at 4554.215 kb on - strand, within PP_4041at 4554.231 kb on + strand, within PP_4041at 4554.231 kb on + strand, within PP_4041at 4554.231 kb on + strand, within PP_4041at 4554.231 kb on + strand, within PP_4041at 4554.232 kb on - strand, within PP_4041at 4554.232 kb on - strand, within PP_4041at 4554.277 kb on + strand, within PP_4041at 4554.278 kb on - strand, within PP_4041at 4554.279 kb on + strand, within PP_4041at 4554.279 kb on + strand, within PP_4041at 4554.279 kb on + strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.280 kb on - strand, within PP_4041at 4554.288 kb on - strand, within PP_4041at 4554.445 kb on + strand, within PP_4041at 4554.726 kb on + strand, within PP_4041at 4554.727 kb on - strandat 4554.903 kb on + strandat 4554.903 kb on + strandat 4555.070 kb on + strandat 4555.071 kb on - strandat 4555.187 kb on + strand, within PP_4042at 4555.187 kb on + strand, within PP_4042at 4555.187 kb on + strand, within PP_4042at 4555.188 kb on - strand, within PP_4042at 4555.188 kb on - strand, within PP_4042at 4555.188 kb on - strand, within PP_4042at 4555.238 kb on + strand, within PP_4042at 4555.239 kb on - strand, within PP_4042at 4555.344 kb on - strand, within PP_4042at 4555.388 kb on + strand, within PP_4042at 4555.457 kb on + strand, within PP_4042at 4555.457 kb on + strand, within PP_4042at 4555.458 kb on - strand, within PP_4042at 4555.511 kb on + strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.512 kb on - strand, within PP_4042at 4555.595 kb on + strand, within PP_4042at 4555.606 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.781 kb on + strand, within PP_4042at 4555.782 kb on - strand, within PP_4042at 4555.782 kb on - strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.844 kb on + strand, within PP_4042at 4555.845 kb on - strand, within PP_4042at 4555.899 kb on + strand, within PP_4042at 4555.899 kb on + strand, within PP_4042at 4555.900 kb on - strand, within PP_4042at 4555.900 kb on - strand, within PP_4042at 4555.900 kb on - strand, within PP_4042

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source 4-vinylphenol 0.1 mM
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4,552,211 + PP_4039 0.24 +2.5
4,552,212 - PP_4039 0.24 +0.3
4,552,212 - PP_4039 0.24 -0.8
4,552,212 - PP_4039 0.24 +0.9
4,552,212 - PP_4039 0.24 +0.9
4,552,236 + PP_4039 0.29 -0.5
4,552,236 + PP_4039 0.29 -1.4
4,552,236 + PP_4039 0.29 -1.0
4,552,236 + PP_4039 0.29 +2.9
4,552,236 + PP_4039 0.29 -1.1
4,552,236 + PP_4039 0.29 -0.1
4,552,236 + PP_4039 0.29 +3.6
4,552,237 - PP_4039 0.29 -2.4
4,552,237 - PP_4039 0.29 -0.4
4,552,238 + PP_4039 0.29 +0.1
4,552,238 + PP_4039 0.29 -0.8
4,552,238 + PP_4039 0.29 -1.7
4,552,238 + PP_4039 0.29 +0.6
4,552,238 + PP_4039 0.29 +1.9
4,552,238 + PP_4039 0.29 +0.4
4,552,238 + -0.1
4,552,238 + PP_4039 0.29 -1.1
4,552,239 - PP_4039 0.29 -0.5
4,552,239 - PP_4039 0.29 -1.3
4,552,239 - PP_4039 0.29 -3.8
4,552,239 - PP_4039 0.29 +0.9
4,552,269 + PP_4039 0.35 -1.2
4,552,269 + PP_4039 0.35 +1.0
4,552,439 + PP_4039 0.67 +0.7
4,552,556 + +0.6
4,552,556 + +0.9
4,552,557 - -0.3
4,552,557 - +1.3
4,552,557 - -2.7
4,552,557 - +0.2
4,552,557 - +3.0
4,552,560 - +1.0
4,552,560 - +0.4
4,552,670 + +0.0
4,552,854 + PP_4040 0.41 -0.4
4,552,855 - PP_4040 0.42 +0.2
4,552,938 + PP_4040 0.65 -1.9
4,552,939 - PP_4040 0.65 -1.1
4,552,973 + PP_4040 0.75 -1.4
4,552,974 - PP_4040 0.75 +1.3
4,552,983 + PP_4040 0.78 -1.0
4,552,983 + PP_4040 0.78 -0.8
4,552,983 + PP_4040 0.78 +1.4
4,552,983 + PP_4040 0.78 +0.3
4,552,984 - PP_4040 0.78 +1.9
4,552,984 - PP_4040 0.78 -0.8
4,552,984 - PP_4040 0.78 -0.4
4,552,984 - PP_4040 0.78 +0.9
4,552,984 - PP_4040 0.78 +0.7
4,553,064 + -1.3
4,553,064 + +0.4
4,553,064 + -1.3
4,553,064 + +2.1
4,553,064 + -0.0
4,553,064 + -1.2
4,553,064 + -0.2
4,553,064 + -0.4
4,553,064 + +0.5
4,553,064 + -0.7
4,553,064 + +0.2
4,553,064 + -2.2
4,553,064 + +1.3
4,553,065 - -1.2
4,553,065 - -0.5
4,553,065 - -0.3
4,553,065 - +2.5
4,553,091 + +1.6
4,553,091 + +0.4
4,553,091 + +0.3
4,553,092 - -2.7
4,553,096 + +1.0
4,553,201 + +0.9
4,553,201 + +0.4
4,553,202 - +1.5
4,553,256 + -1.3
4,553,256 + -1.1
4,553,256 + +1.5
4,553,256 + -0.5
4,553,308 - -0.7
4,553,308 - +0.9
4,553,346 + PP_4041 0.12 -2.3
4,553,347 - PP_4041 0.12 -0.9
4,553,347 - PP_4041 0.12 +0.4
4,553,427 + PP_4041 0.17 +2.2
4,553,562 + PP_4041 0.24 +1.9
4,553,562 + PP_4041 0.24 -0.6
4,553,563 - PP_4041 0.24 +0.5
4,553,791 + PP_4041 0.37 +1.3
4,553,791 + PP_4041 0.37 -1.7
4,553,792 - PP_4041 0.37 +0.3
4,553,792 - PP_4041 0.37 -0.3
4,553,802 + PP_4041 0.37 +0.6
4,553,803 - PP_4041 0.38 -0.3
4,553,810 + PP_4041 0.38 -0.1
4,553,810 + PP_4041 0.38 +0.9
4,553,810 + PP_4041 0.38 -1.3
4,553,895 + PP_4041 0.43 -1.0
4,553,895 + PP_4041 0.43 +0.1
4,553,895 + PP_4041 0.43 +0.0
4,553,895 + PP_4041 0.43 +2.9
4,553,896 - PP_4041 0.43 +0.9
4,553,896 - PP_4041 0.43 +0.9
4,553,896 - PP_4041 0.43 -0.2
4,553,896 - PP_4041 0.43 +0.6
4,553,896 - PP_4041 0.43 +0.9
4,553,896 - PP_4041 0.43 +0.2
4,553,982 + PP_4041 0.47 -0.4
4,553,982 + PP_4041 0.47 -0.3
4,553,982 + PP_4041 0.47 -1.1
4,553,982 + -0.1
4,553,982 + PP_4041 0.47 -2.0
4,553,982 + PP_4041 0.47 +0.2
4,553,982 + PP_4041 0.47 -0.2
4,553,982 + PP_4041 0.47 -3.0
4,553,983 - PP_4041 0.48 +0.5
4,553,983 - PP_4041 0.48 -0.5
4,553,983 - PP_4041 0.48 +2.1
4,553,983 - PP_4041 0.48 -0.8
4,553,983 - PP_4041 0.48 +0.3
4,554,015 + PP_4041 0.49 +1.2
4,554,015 + PP_4041 0.49 +1.1
4,554,015 + PP_4041 0.49 +1.6
4,554,015 + PP_4041 0.49 +0.9
4,554,016 - PP_4041 0.49 +1.1
4,554,016 - PP_4041 0.49 +0.5
4,554,016 - PP_4041 0.49 +0.6
4,554,040 + PP_4041 0.51 -0.4
4,554,093 + PP_4041 0.54 +1.9
4,554,094 - -0.1
4,554,153 + PP_4041 0.57 +2.1
4,554,153 + PP_4041 0.57 +0.9
4,554,154 - PP_4041 0.57 -1.0
4,554,215 - PP_4041 0.60 -0.8
4,554,231 + PP_4041 0.61 -0.3
4,554,231 + PP_4041 0.61 +0.4
4,554,231 + PP_4041 0.61 -0.7
4,554,231 + PP_4041 0.61 -0.7
4,554,232 - PP_4041 0.61 -1.1
4,554,232 - PP_4041 0.61 +4.3
4,554,277 + PP_4041 0.64 +0.7
4,554,278 - PP_4041 0.64 -1.1
4,554,279 + PP_4041 0.64 -0.1
4,554,279 + PP_4041 0.64 +0.5
4,554,279 + PP_4041 0.64 +0.7
4,554,280 - PP_4041 0.64 -0.0
4,554,280 - PP_4041 0.64 +0.9
4,554,280 - PP_4041 0.64 -1.7
4,554,280 - PP_4041 0.64 -2.3
4,554,280 - PP_4041 0.64 +0.9
4,554,280 - PP_4041 0.64 -0.6
4,554,288 - PP_4041 0.64 +2.6
4,554,445 + PP_4041 0.73 +0.7
4,554,726 + PP_4041 0.89 +0.7
4,554,727 - +2.5
4,554,903 + +2.9
4,554,903 + -2.4
4,555,070 + -0.6
4,555,071 - +2.2
4,555,187 + PP_4042 0.13 -1.4
4,555,187 + PP_4042 0.13 -2.3
4,555,187 + PP_4042 0.13 +0.5
4,555,188 - PP_4042 0.13 -1.5
4,555,188 - PP_4042 0.13 -0.1
4,555,188 - PP_4042 0.13 -0.4
4,555,238 + PP_4042 0.16 +1.1
4,555,239 - PP_4042 0.16 +0.2
4,555,344 - PP_4042 0.23 +2.5
4,555,388 + PP_4042 0.26 +0.3
4,555,457 + PP_4042 0.31 +0.4
4,555,457 + PP_4042 0.31 +0.0
4,555,458 - PP_4042 0.31 -0.9
4,555,511 + PP_4042 0.35 -0.6
4,555,512 - PP_4042 0.35 +0.7
4,555,512 - PP_4042 0.35 +2.5
4,555,512 - PP_4042 0.35 +4.1
4,555,512 - PP_4042 0.35 -0.0
4,555,512 - PP_4042 0.35 +0.9
4,555,512 - PP_4042 0.35 -0.6
4,555,595 + PP_4042 0.40 +2.2
4,555,606 + PP_4042 0.41 +0.7
4,555,781 + PP_4042 0.52 -1.4
4,555,781 + PP_4042 0.52 -0.8
4,555,781 + PP_4042 0.52 +0.4
4,555,781 + PP_4042 0.52 -1.0
4,555,782 - PP_4042 0.53 +0.7
4,555,782 - PP_4042 0.53 +0.3
4,555,844 + PP_4042 0.57 -2.1
4,555,844 + PP_4042 0.57 -0.5
4,555,844 + PP_4042 0.57 +3.2
4,555,844 + PP_4042 0.57 -0.5
4,555,844 + PP_4042 0.57 -0.2
4,555,844 + PP_4042 0.57 -0.6
4,555,844 + PP_4042 0.57 +3.9
4,555,845 - PP_4042 0.57 +1.4
4,555,899 + PP_4042 0.60 -0.8
4,555,899 + PP_4042 0.60 +0.1
4,555,900 - PP_4042 0.60 -2.0
4,555,900 - PP_4042 0.60 -0.2
4,555,900 - PP_4042 0.60 +4.2

Or see this region's nucleotide sequence