Experiment: carbon source 4-vinylphenol 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4753 and PP_4754 are separated by 123 nucleotides PP_4754 and PP_4755 are separated by 129 nucleotides PP_4755 and PP_4756 are separated by 215 nucleotides
PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875
_4753
PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646
_4754
PP_4755: PP_4755 - Outer membrane ferrichrome-iron receptor, at 5,411,776 to 5,414,169
_4755
PP_4756: PP_4756 - gamma-aminobutyrate permease, at 5,414,385 to 5,415,776
_4756
Position (kb) 5411
5412
5413
5414
5415 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.913 kb on + strand at 5410.914 kb on - strand at 5411.059 kb on - strand at 5411.059 kb on - strand at 5411.069 kb on - strand, within PP_4754 at 5411.248 kb on + strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.249 kb on - strand, within PP_4754 at 5411.457 kb on + strand, within PP_4754 at 5411.476 kb on + strand, within PP_4754 at 5411.494 kb on + strand, within PP_4754 at 5411.495 kb on - strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.539 kb on + strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.540 kb on - strand, within PP_4754 at 5411.561 kb on + strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.562 kb on - strand, within PP_4754 at 5411.645 kb on - strand at 5411.680 kb on + strand at 5411.681 kb on - strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.784 kb on + strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.785 kb on - strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.786 kb on + strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.787 kb on - strand at 5411.822 kb on + strand at 5411.826 kb on - strand at 5411.913 kb on - strand at 5411.959 kb on - strand at 5411.975 kb on + strand at 5411.975 kb on + strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.976 kb on - strand at 5411.978 kb on + strand at 5411.978 kb on + strand at 5411.979 kb on - strand at 5411.979 kb on - strand at 5411.990 kb on + strand at 5411.990 kb on + strand at 5411.991 kb on - strand at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.028 kb on + strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.029 kb on - strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.035 kb on + strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.036 kb on - strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.038 kb on + strand, within PP_4755 at 5412.039 kb on - strand, within PP_4755 at 5412.084 kb on + strand, within PP_4755 at 5412.108 kb on - strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.140 kb on + strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.141 kb on - strand, within PP_4755 at 5412.146 kb on + strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.147 kb on - strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.335 kb on + strand, within PP_4755 at 5412.354 kb on - strand, within PP_4755 at 5412.376 kb on - strand, within PP_4755 at 5412.420 kb on - strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.444 kb on + strand, within PP_4755 at 5412.445 kb on - strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.446 kb on + strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.447 kb on - strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.512 kb on + strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.513 kb on - strand, within PP_4755 at 5412.636 kb on + strand at 5412.638 kb on + strand, within PP_4755 at 5412.638 kb on + strand, within PP_4755 at 5412.707 kb on + strand, within PP_4755 at 5412.792 kb on - strand, within PP_4755 at 5412.792 kb on - strand, within PP_4755 at 5412.849 kb on - strand, within PP_4755 at 5412.849 kb on - strand, within PP_4755 at 5412.894 kb on - strand, within PP_4755 at 5412.894 kb on - strand, within PP_4755 at 5412.899 kb on + strand, within PP_4755 at 5412.900 kb on - strand, within PP_4755 at 5412.926 kb on + strand, within PP_4755 at 5412.927 kb on - strand, within PP_4755 at 5412.973 kb on - strand, within PP_4755 at 5413.031 kb on + strand at 5413.032 kb on - strand, within PP_4755 at 5413.050 kb on - strand, within PP_4755 at 5413.050 kb on - strand, within PP_4755 at 5413.193 kb on + strand, within PP_4755 at 5413.267 kb on + strand, within PP_4755 at 5413.267 kb on + strand, within PP_4755 at 5413.268 kb on - strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.295 kb on + strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.296 kb on - strand, within PP_4755 at 5413.304 kb on + strand, within PP_4755 at 5413.305 kb on - strand, within PP_4755 at 5413.305 kb on - strand, within PP_4755 at 5413.313 kb on + strand, within PP_4755 at 5413.313 kb on + strand, within PP_4755 at 5413.436 kb on + strand, within PP_4755 at 5413.437 kb on - strand, within PP_4755 at 5413.437 kb on - strand, within PP_4755 at 5413.488 kb on - strand, within PP_4755 at 5413.488 kb on - strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.520 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.544 kb on + strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.545 kb on - strand, within PP_4755 at 5413.571 kb on + strand, within PP_4755 at 5413.572 kb on - strand, within PP_4755 at 5413.572 kb on - strand, within PP_4755 at 5413.681 kb on + strand, within PP_4755 at 5413.829 kb on + strand, within PP_4755 at 5413.829 kb on + strand, within PP_4755 at 5413.830 kb on - strand, within PP_4755 at 5413.899 kb on + strand, within PP_4755 at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.087 kb on + strand at 5414.088 kb on - strand at 5414.088 kb on - strand at 5414.088 kb on - strand at 5414.207 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.222 kb on + strand at 5414.223 kb on - strand at 5414.223 kb on - strand at 5414.304 kb on + strand at 5414.367 kb on - strand at 5414.367 kb on - strand at 5414.506 kb on + strand at 5414.506 kb on + strand at 5414.506 kb on + strand at 5414.507 kb on - strand at 5414.507 kb on - strand at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.650 kb on + strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.651 kb on - strand, within PP_4756 at 5414.664 kb on + strand, within PP_4756 at 5414.665 kb on - strand, within PP_4756 at 5414.716 kb on + strand, within PP_4756 at 5414.716 kb on + strand, within PP_4756 at 5414.775 kb on + strand, within PP_4756 at 5414.857 kb on + strand, within PP_4756 at 5414.857 kb on + strand, within PP_4756 at 5414.858 kb on - strand, within PP_4756 at 5414.858 kb on - strand, within PP_4756 at 5414.882 kb on + strand, within PP_4756 at 5414.956 kb on + strand, within PP_4756 at 5414.957 kb on - strand, within PP_4756 at 5415.028 kb on + strand, within PP_4756 at 5415.028 kb on + strand, within PP_4756 at 5415.029 kb on - strand, within PP_4756
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source 4-vinylphenol 0.01 mM remove 5,410,913 + +0.1 5,410,913 + -0.7 5,410,913 + +0.5 5,410,913 + -0.3 5,410,913 + -0.1 5,410,914 - -0.8 5,411,059 - +0.6 5,411,059 - -1.2 5,411,069 - PP_4754 0.11 +1.2 5,411,248 + PP_4754 0.38 -1.9 5,411,249 - PP_4754 0.39 -0.3 5,411,249 - PP_4754 0.39 +1.7 5,411,457 + PP_4754 0.71 -0.0 5,411,476 + PP_4754 0.74 +0.7 5,411,494 + PP_4754 0.76 -1.6 5,411,495 - PP_4754 0.77 +0.5 5,411,539 + PP_4754 0.83 +0.7 5,411,539 + PP_4754 0.83 -1.8 5,411,539 + PP_4754 0.83 +2.2 5,411,539 + PP_4754 0.83 -3.7 5,411,539 + PP_4754 0.83 -1.3 5,411,540 - PP_4754 0.83 -3.2 5,411,540 - PP_4754 0.83 -2.3 5,411,540 - PP_4754 0.83 -2.3 5,411,540 - PP_4754 0.83 +2.7 5,411,561 + PP_4754 0.87 -2.1 5,411,562 - PP_4754 0.87 +1.9 5,411,562 - PP_4754 0.87 -1.2 5,411,562 - PP_4754 0.87 -1.9 5,411,645 - -0.1 5,411,680 + -0.3 5,411,681 - -0.0 5,411,784 + -0.1 5,411,784 + +0.2 5,411,784 + -0.5 5,411,784 + -0.3 5,411,785 - +0.7 5,411,785 - -1.3 5,411,785 - +2.5 5,411,786 + +1.0 5,411,786 + -0.2 5,411,786 + +2.7 5,411,786 + +1.7 5,411,787 - +0.2 5,411,787 - -1.5 5,411,787 - -0.6 5,411,787 - +2.2 5,411,787 - +0.8 5,411,822 + +1.1 5,411,826 - -1.2 5,411,913 - -0.0 5,411,959 - -0.2 5,411,975 + +3.0 5,411,975 + -0.3 5,411,976 - +1.0 5,411,976 - +0.2 5,411,976 - -0.1 5,411,976 - +0.3 5,411,976 - +0.8 5,411,978 + -0.8 5,411,978 + -1.8 5,411,979 - -0.7 5,411,979 - +2.7 5,411,990 + -0.3 5,411,990 + +0.3 5,411,991 - +0.7 5,412,028 + PP_4755 0.11 +0.1 5,412,028 + PP_4755 0.11 -2.7 5,412,028 + PP_4755 0.11 -4.4 5,412,029 - PP_4755 0.11 -1.6 5,412,029 - PP_4755 0.11 -0.5 5,412,029 - PP_4755 0.11 +0.2 5,412,035 + PP_4755 0.11 -0.8 5,412,035 + PP_4755 0.11 +0.7 5,412,036 - PP_4755 0.11 -0.9 5,412,036 - PP_4755 0.11 -1.7 5,412,036 - PP_4755 0.11 -1.5 5,412,036 - PP_4755 0.11 +1.2 5,412,036 - PP_4755 0.11 -0.3 5,412,036 - PP_4755 0.11 -0.4 5,412,036 - PP_4755 0.11 +2.2 5,412,038 + PP_4755 0.11 -0.5 5,412,038 + PP_4755 0.11 +0.7 5,412,038 + PP_4755 0.11 +0.7 5,412,039 - PP_4755 0.11 -0.1 5,412,084 + PP_4755 0.13 -1.6 5,412,108 - PP_4755 0.14 +0.4 5,412,140 + PP_4755 0.15 -0.6 5,412,140 + PP_4755 0.15 +0.3 5,412,140 + PP_4755 0.15 -0.3 5,412,140 + PP_4755 0.15 -0.8 5,412,141 - PP_4755 0.15 +2.2 5,412,141 - PP_4755 0.15 +0.7 5,412,141 - PP_4755 0.15 -2.0 5,412,141 - PP_4755 0.15 -2.5 5,412,146 + PP_4755 0.15 +0.2 5,412,147 - PP_4755 0.15 -0.6 5,412,147 - PP_4755 0.15 -0.6 5,412,335 + PP_4755 0.23 -0.5 5,412,335 + PP_4755 0.23 -1.0 5,412,354 - PP_4755 0.24 +2.2 5,412,376 - PP_4755 0.25 +1.2 5,412,420 - PP_4755 0.27 -3.9 5,412,444 + PP_4755 0.28 -0.7 5,412,444 + PP_4755 0.28 +0.7 5,412,444 + PP_4755 0.28 -2.3 5,412,445 - PP_4755 0.28 -0.1 5,412,446 + PP_4755 0.28 -1.5 5,412,446 + PP_4755 0.28 +0.5 5,412,446 + PP_4755 0.28 -0.1 5,412,446 + PP_4755 0.28 +1.4 5,412,446 + PP_4755 0.28 -0.9 5,412,446 + PP_4755 0.28 +0.1 5,412,446 + PP_4755 0.28 -0.2 5,412,447 - PP_4755 0.28 +2.1 5,412,447 - PP_4755 0.28 +0.8 5,412,447 - PP_4755 0.28 -0.2 5,412,447 - PP_4755 0.28 -1.3 5,412,447 - PP_4755 0.28 -1.9 5,412,447 - PP_4755 0.28 -2.1 5,412,447 - PP_4755 0.28 +1.1 5,412,447 - PP_4755 0.28 -1.3 5,412,512 + PP_4755 0.31 -1.8 5,412,512 + PP_4755 0.31 -2.8 5,412,512 + PP_4755 0.31 +0.2 5,412,512 + PP_4755 0.31 -1.4 5,412,513 - PP_4755 0.31 -0.9 5,412,513 - PP_4755 0.31 -0.6 5,412,513 - PP_4755 0.31 -1.4 5,412,513 - PP_4755 0.31 -3.1 5,412,636 + -0.3 5,412,638 + PP_4755 0.36 -0.3 5,412,638 + PP_4755 0.36 -0.1 5,412,707 + PP_4755 0.39 +2.4 5,412,792 - PP_4755 0.42 +2.5 5,412,792 - PP_4755 0.42 -3.0 5,412,849 - PP_4755 0.45 -1.2 5,412,849 - PP_4755 0.45 +1.0 5,412,894 - PP_4755 0.47 +0.7 5,412,894 - PP_4755 0.47 +0.3 5,412,899 + PP_4755 0.47 -0.6 5,412,900 - PP_4755 0.47 +1.1 5,412,926 + PP_4755 0.48 -1.2 5,412,927 - PP_4755 0.48 -0.7 5,412,973 - PP_4755 0.50 +1.2 5,413,031 + -0.3 5,413,032 - PP_4755 0.52 -0.5 5,413,050 - PP_4755 0.53 -1.1 5,413,050 - PP_4755 0.53 +0.7 5,413,193 + PP_4755 0.59 -1.3 5,413,267 + PP_4755 0.62 +2.3 5,413,267 + PP_4755 0.62 -0.2 5,413,268 - PP_4755 0.62 +1.0 5,413,295 + PP_4755 0.63 -3.2 5,413,295 + PP_4755 0.63 +2.0 5,413,295 + PP_4755 0.63 -3.1 5,413,295 + PP_4755 0.63 -4.8 5,413,295 + PP_4755 0.63 -0.4 5,413,296 - PP_4755 0.63 +0.9 5,413,296 - PP_4755 0.63 -0.3 5,413,296 - PP_4755 0.63 +1.3 5,413,296 - PP_4755 0.63 -1.4 5,413,296 - PP_4755 0.63 -0.0 5,413,296 - PP_4755 0.63 -0.6 5,413,296 - PP_4755 0.63 -0.8 5,413,296 - PP_4755 0.63 -0.3 5,413,296 - PP_4755 0.63 -1.1 5,413,296 - PP_4755 0.63 -2.3 5,413,296 - PP_4755 0.63 +0.1 5,413,296 - PP_4755 0.63 -0.8 5,413,304 + PP_4755 0.64 -0.9 5,413,305 - PP_4755 0.64 +0.5 5,413,305 - PP_4755 0.64 +0.2 5,413,313 + PP_4755 0.64 -3.0 5,413,313 + PP_4755 0.64 -2.0 5,413,436 + PP_4755 0.69 -0.1 5,413,437 - PP_4755 0.69 -1.7 5,413,437 - PP_4755 0.69 -1.5 5,413,488 - PP_4755 0.72 -0.6 5,413,488 - PP_4755 0.72 +0.2 5,413,520 + PP_4755 0.73 +0.8 5,413,520 + PP_4755 0.73 +0.4 5,413,520 + PP_4755 0.73 -1.4 5,413,520 + PP_4755 0.73 +3.0 5,413,544 + PP_4755 0.74 +0.3 5,413,544 + PP_4755 0.74 -1.2 5,413,544 + PP_4755 0.74 -1.5 5,413,544 + PP_4755 0.74 -2.2 5,413,544 + PP_4755 0.74 +0.3 5,413,545 - PP_4755 0.74 +0.6 5,413,545 - PP_4755 0.74 +0.7 5,413,545 - PP_4755 0.74 -0.3 5,413,571 + PP_4755 0.75 +0.1 5,413,572 - PP_4755 0.75 +0.9 5,413,572 - PP_4755 0.75 +0.3 5,413,681 + PP_4755 0.80 -1.0 5,413,829 + PP_4755 0.86 -1.1 5,413,829 + PP_4755 0.86 +1.7 5,413,830 - PP_4755 0.86 -1.2 5,413,899 + PP_4755 0.89 -0.5 5,414,087 + -0.7 5,414,087 + -2.3 5,414,087 + +0.4 5,414,087 + -1.0 5,414,087 + +0.7 5,414,088 - -0.7 5,414,088 - -0.8 5,414,088 - -0.3 5,414,207 + +2.4 5,414,222 + -0.2 5,414,222 + -0.4 5,414,222 + -1.7 5,414,222 + +0.2 5,414,222 + -1.9 5,414,222 + -0.1 5,414,223 - -0.1 5,414,223 - -1.3 5,414,304 + +0.7 5,414,367 - -1.4 5,414,367 - -0.4 5,414,506 + -0.3 5,414,506 + +0.1 5,414,506 + -0.1 5,414,507 - +1.0 5,414,507 - -1.3 5,414,650 + PP_4756 0.19 -2.5 5,414,650 + PP_4756 0.19 -0.1 5,414,650 + PP_4756 0.19 +2.2 5,414,650 + PP_4756 0.19 +0.4 5,414,650 + PP_4756 0.19 +1.0 5,414,651 - PP_4756 0.19 -0.1 5,414,651 - PP_4756 0.19 +1.3 5,414,651 - PP_4756 0.19 -1.3 5,414,651 - PP_4756 0.19 -2.4 5,414,664 + PP_4756 0.20 +1.2 5,414,665 - PP_4756 0.20 -1.0 5,414,716 + PP_4756 0.24 +1.4 5,414,716 + PP_4756 0.24 -1.3 5,414,775 + PP_4756 0.28 +0.1 5,414,857 + PP_4756 0.34 +0.4 5,414,857 + PP_4756 0.34 -1.4 5,414,858 - PP_4756 0.34 -1.5 5,414,858 - PP_4756 0.34 -1.1 5,414,882 + PP_4756 0.36 -0.8 5,414,956 + PP_4756 0.41 +2.0 5,414,957 - PP_4756 0.41 -2.1 5,415,028 + PP_4756 0.46 +0.2 5,415,028 + PP_4756 0.46 +0.7 5,415,029 - PP_4756 0.46 -0.3
Or see this region's nucleotide sequence