Strain Fitness in Pseudomonas putida KT2440 around PP_4041

Experiment: carbon source 4-vinylphenol 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source 4-vinylphenol 0.01 mM
4,552,211	+		PP_4039	0.24	+3.5
4,552,212	-		PP_4039	0.24	-0.3
4,552,212	-		PP_4039	0.24	-0.2
4,552,212	-		PP_4039	0.24	+0.7
4,552,212	-		PP_4039	0.24	+3.3
4,552,236	+		PP_4039	0.29	-0.6
4,552,236	+		PP_4039	0.29	-1.6
4,552,236	+		PP_4039	0.29	-0.6
4,552,236	+		PP_4039	0.29	+1.7
4,552,236	+		PP_4039	0.29	-1.6
4,552,236	+		PP_4039	0.29	-3.9
4,552,236	+		PP_4039	0.29	+2.9
4,552,237	-		PP_4039	0.29	-2.6
4,552,237	-		PP_4039	0.29	+1.1
4,552,238	+		PP_4039	0.29	+0.6
4,552,238	+		PP_4039	0.29	-0.8
4,552,238	+		PP_4039	0.29	+0.5
4,552,238	+		PP_4039	0.29	-0.0
4,552,238	+		PP_4039	0.29	+2.7
4,552,238	+		PP_4039	0.29	+0.7
4,552,238	+				-0.3
4,552,238	+		PP_4039	0.29	+0.5
4,552,239	-		PP_4039	0.29	+0.5
4,552,239	-		PP_4039	0.29	-2.4
4,552,239	-		PP_4039	0.29	-1.9
4,552,239	-		PP_4039	0.29	+1.7
4,552,269	+		PP_4039	0.35	-3.0
4,552,269	+		PP_4039	0.35	+1.7
4,552,439	+		PP_4039	0.67	-0.4
4,552,556	+				-1.6
4,552,556	+				+1.7
4,552,557	-				-0.1
4,552,557	-				+1.5
4,552,557	-				-1.9
4,552,557	-				+0.6
4,552,557	-				+2.6
4,552,560	-				-0.4
4,552,560	-				+0.1
4,552,670	+				-3.7
4,552,854	+		PP_4040	0.41	+1.2
4,552,855	-		PP_4040	0.42	-0.3
4,552,938	+		PP_4040	0.65	+0.9
4,552,939	-		PP_4040	0.65	-2.3
4,552,973	+		PP_4040	0.75	-3.2
4,552,974	-		PP_4040	0.75	+2.1
4,552,983	+		PP_4040	0.78	-0.4
4,552,983	+		PP_4040	0.78	-2.0
4,552,983	+		PP_4040	0.78	-0.7
4,552,983	+		PP_4040	0.78	+2.7
4,552,984	-		PP_4040	0.78	+3.9
4,552,984	-		PP_4040	0.78	+0.3
4,552,984	-		PP_4040	0.78	+1.0
4,552,984	-		PP_4040	0.78	+1.7
4,552,984	-		PP_4040	0.78	-1.5
4,553,064	+				-0.5
4,553,064	+				-1.0
4,553,064	+				-0.1
4,553,064	+				+2.2
4,553,064	+				-0.6
4,553,064	+				-1.8
4,553,064	+				-2.0
4,553,064	+				-0.0
4,553,064	+				+1.3
4,553,064	+				+0.5
4,553,064	+				+0.6
4,553,064	+				-3.4
4,553,064	+				+0.7
4,553,065	-				-1.1
4,553,065	-				-1.9
4,553,065	-				+0.1
4,553,065	-				+2.7
4,553,091	+				+1.9
4,553,091	+				+0.7
4,553,091	+				+0.8
4,553,092	-				-0.9
4,553,096	+				+0.5
4,553,201	+				+1.7
4,553,201	+				-1.1
4,553,202	-				-1.3
4,553,256	+				-0.1
4,553,256	+				-0.4
4,553,256	+				-0.9
4,553,256	+				+0.7
4,553,308	-				-0.4
4,553,308	-				+0.7
4,553,346	+		PP_4041	0.12	-0.9
4,553,347	-		PP_4041	0.12	+0.5
4,553,347	-		PP_4041	0.12	+1.3
4,553,427	+		PP_4041	0.17	+0.4
4,553,562	+		PP_4041	0.24	+1.7
4,553,562	+		PP_4041	0.24	+0.5
4,553,563	-		PP_4041	0.24	+0.9
4,553,791	+		PP_4041	0.37	+1.5
4,553,791	+		PP_4041	0.37	-1.9
4,553,792	-		PP_4041	0.37	-0.5
4,553,792	-		PP_4041	0.37	-0.1
4,553,802	+		PP_4041	0.37	+1.4
4,553,803	-		PP_4041	0.38	-1.5
4,553,810	+		PP_4041	0.38	-0.2
4,553,810	+		PP_4041	0.38	+1.7
4,553,810	+		PP_4041	0.38	-3.4
4,553,895	+		PP_4041	0.43	-3.2
4,553,895	+		PP_4041	0.43	+1.8
4,553,895	+		PP_4041	0.43	+0.7
4,553,895	+		PP_4041	0.43	+0.7
4,553,896	-		PP_4041	0.43	+0.7
4,553,896	-		PP_4041	0.43	+0.1
4,553,896	-		PP_4041	0.43	-0.5
4,553,896	-		PP_4041	0.43	+0.7
4,553,896	-		PP_4041	0.43	+0.7
4,553,896	-		PP_4041	0.43	+1.9
4,553,982	+		PP_4041	0.47	+1.1
4,553,982	+		PP_4041	0.47	-0.8
4,553,982	+		PP_4041	0.47	-1.3
4,553,982	+				-0.3
4,553,982	+		PP_4041	0.47	-2.2
4,553,982	+		PP_4041	0.47	-0.1
4,553,982	+		PP_4041	0.47	+0.9
4,553,982	+		PP_4041	0.47	-1.6
4,553,983	-		PP_4041	0.48	+1.5
4,553,983	-		PP_4041	0.48	-0.1
4,553,983	-		PP_4041	0.48	+3.2
4,553,983	-		PP_4041	0.48	+0.3
4,553,983	-		PP_4041	0.48	+1.0
4,554,015	+		PP_4041	0.49	+0.9
4,554,015	+		PP_4041	0.49	-1.9
4,554,015	+		PP_4041	0.49	+2.5
4,554,015	+		PP_4041	0.49	+0.7
4,554,016	-		PP_4041	0.49	+0.9
4,554,016	-		PP_4041	0.49	+1.1
4,554,016	-		PP_4041	0.49	-0.1
4,554,040	+		PP_4041	0.51	-0.0
4,554,093	+		PP_4041	0.54	+1.1
4,554,094	-				-0.3
4,554,153	+		PP_4041	0.57	+1.7
4,554,153	+		PP_4041	0.57	+1.3
4,554,154	-		PP_4041	0.57	+0.4
4,554,215	-		PP_4041	0.60	-2.0
4,554,231	+		PP_4041	0.61	+0.7
4,554,231	+		PP_4041	0.61	-1.0
4,554,231	+		PP_4041	0.61	-0.9
4,554,231	+		PP_4041	0.61	-2.2
4,554,232	-		PP_4041	0.61	+0.2
4,554,232	-		PP_4041	0.61	+2.7
4,554,277	+		PP_4041	0.64	-1.0
4,554,278	-		PP_4041	0.64	+1.1
4,554,279	+		PP_4041	0.64	-1.0
4,554,279	+		PP_4041	0.64	-1.3
4,554,279	+		PP_4041	0.64	+1.9
4,554,280	-		PP_4041	0.64	-3.4
4,554,280	-		PP_4041	0.64	+1.7
4,554,280	-		PP_4041	0.64	+1.7
4,554,280	-		PP_4041	0.64	-3.4
4,554,280	-		PP_4041	0.64	+0.7
4,554,280	-		PP_4041	0.64	-0.9
4,554,288	-		PP_4041	0.64	+2.1
4,554,445	+		PP_4041	0.73	-2.3
4,554,726	+		PP_4041	0.89	+0.6
4,554,727	-				+0.7
4,554,903	+				+0.7
4,554,903	+				+1.5
4,555,070	+				-0.1
4,555,071	-				+0.7
4,555,187	+		PP_4042	0.13	-0.1
4,555,187	+		PP_4042	0.13	-2.4
4,555,187	+		PP_4042	0.13	-0.5
4,555,188	-		PP_4042	0.13	-0.7
4,555,188	-		PP_4042	0.13	+0.7
4,555,188	-		PP_4042	0.13	-1.1
4,555,238	+		PP_4042	0.16	-0.1
4,555,239	-		PP_4042	0.16	-3.8
4,555,344	-		PP_4042	0.23	+0.7
4,555,388	+		PP_4042	0.26	-1.7
4,555,457	+		PP_4042	0.31	-1.1
4,555,457	+		PP_4042	0.31	+0.1
4,555,458	-		PP_4042	0.31	-1.9
4,555,511	+		PP_4042	0.35	-0.0
4,555,512	-		PP_4042	0.35	-2.2
4,555,512	-		PP_4042	0.35	+2.7
4,555,512	-		PP_4042	0.35	+3.7
4,555,512	-		PP_4042	0.35	+0.7
4,555,512	-		PP_4042	0.35	+0.7
4,555,512	-		PP_4042	0.35	+0.4
4,555,595	+		PP_4042	0.40	-2.1
4,555,606	+		PP_4042	0.41	+0.2
4,555,781	+		PP_4042	0.52	+0.3
4,555,781	+		PP_4042	0.52	+0.3
4,555,781	+		PP_4042	0.52	-0.3
4,555,781	+		PP_4042	0.52	-0.5
4,555,782	-		PP_4042	0.53	+0.2
4,555,782	-		PP_4042	0.53	+0.1
4,555,844	+		PP_4042	0.57	-4.3
4,555,844	+		PP_4042	0.57	-1.3
4,555,844	+		PP_4042	0.57	+4.3
4,555,844	+		PP_4042	0.57	-1.3
4,555,844	+		PP_4042	0.57	-1.0
4,555,844	+		PP_4042	0.57	-1.3
4,555,844	+		PP_4042	0.57	+3.1
4,555,845	-		PP_4042	0.57	+0.7
4,555,899	+		PP_4042	0.60	-1.5
4,555,899	+		PP_4042	0.60	-2.1
4,555,900	-		PP_4042	0.60	-1.2
4,555,900	-		PP_4042	0.60	-1.2
4,555,900	-		PP_4042	0.60	+4.7