Strain Fitness in Agrobacterium fabrum C58 around Atu3285

Experiment: caffeic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3283 and Atu3284 are separated by 4 nucleotidesAtu3284 and Atu3285 are separated by 11 nucleotidesAtu3285 and Atu3286 are separated by 449 nucleotides Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684 Atu3283 Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546 Atu3284 Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552 Atu3285 Atu3286: Atu3286 - ABC transporter permease, at 313,002 to 313,787 Atu3286 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 309.567 kb on + strand, within Atu3283at 309.573 kb on - strand, within Atu3283at 309.575 kb on - strand, within Atu3283at 309.609 kb on - strandat 309.678 kb on + strandat 309.694 kb on - strandat 309.721 kb on - strandat 309.833 kb on - strand, within Atu3284at 309.845 kb on - strand, within Atu3284at 309.923 kb on + strand, within Atu3284at 309.923 kb on - strand, within Atu3284at 309.944 kb on + strand, within Atu3284at 309.957 kb on - strand, within Atu3284at 310.019 kb on - strand, within Atu3284at 310.123 kb on - strand, within Atu3284at 310.141 kb on - strand, within Atu3284at 310.144 kb on + strand, within Atu3284at 310.152 kb on - strand, within Atu3284at 310.152 kb on - strand, within Atu3284at 310.154 kb on + strand, within Atu3284at 310.163 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.264 kb on + strand, within Atu3284at 310.272 kb on - strand, within Atu3284at 310.272 kb on - strand, within Atu3284at 310.332 kb on + strand, within Atu3284at 310.342 kb on + strand, within Atu3284at 310.359 kb on + strand, within Atu3284at 310.511 kb on + strandat 310.541 kb on + strandat 310.548 kb on + strandat 310.556 kb on - strandat 310.701 kb on + strandat 310.714 kb on - strandat 310.716 kb on - strandat 310.718 kb on + strandat 310.723 kb on + strandat 310.731 kb on - strandat 310.831 kb on + strand, within Atu3285at 310.981 kb on - strand, within Atu3285at 311.011 kb on - strand, within Atu3285at 311.066 kb on + strand, within Atu3285at 311.124 kb on - strand, within Atu3285at 311.154 kb on + strand, within Atu3285at 311.263 kb on + strand, within Atu3285at 311.320 kb on + strand, within Atu3285at 311.372 kb on + strand, within Atu3285at 311.373 kb on + strand, within Atu3285at 311.380 kb on - strand, within Atu3285at 311.391 kb on - strand, within Atu3285at 311.441 kb on + strand, within Atu3285at 311.441 kb on + strand, within Atu3285at 311.449 kb on - strand, within Atu3285at 311.449 kb on - strand, within Atu3285at 311.633 kb on + strand, within Atu3285at 311.642 kb on - strand, within Atu3285at 311.744 kb on + strand, within Atu3285at 311.795 kb on - strand, within Atu3285at 311.875 kb on + strand, within Atu3285at 311.875 kb on + strand, within Atu3285at 311.883 kb on - strand, within Atu3285at 311.915 kb on - strand, within Atu3285at 311.915 kb on - strand, within Atu3285at 311.972 kb on - strand, within Atu3285at 311.981 kb on + strand, within Atu3285at 312.024 kb on - strand, within Atu3285at 312.039 kb on + strand, within Atu3285at 312.066 kb on - strand, within Atu3285at 312.113 kb on + strand, within Atu3285at 312.121 kb on - strand, within Atu3285at 312.121 kb on - strand, within Atu3285at 312.121 kb on - strand, within Atu3285at 312.156 kb on + strand, within Atu3285at 312.212 kb on + strand, within Atu3285at 312.220 kb on - strand, within Atu3285at 312.303 kb on + strand, within Atu3285at 312.303 kb on + strand, within Atu3285at 312.303 kb on + strand, within Atu3285at 312.303 kb on + strand, within Atu3285at 312.303 kb on + strand, within Atu3285at 312.311 kb on - strand, within Atu3285at 312.311 kb on - strand, within Atu3285at 312.313 kb on + strand, within Atu3285at 312.321 kb on - strand, within Atu3285at 312.321 kb on - strand, within Atu3285at 312.326 kb on - strand, within Atu3285at 312.343 kb on - strand, within Atu3285at 312.415 kb on + strandat 312.418 kb on + strandat 312.418 kb on + strandat 312.492 kb on + strandat 312.515 kb on - strandat 312.548 kb on + strandat 312.548 kb on + strandat 312.570 kb on - strandat 312.638 kb on - strandat 312.651 kb on + strandat 312.715 kb on - strandat 312.730 kb on - strandat 312.790 kb on + strandat 312.835 kb on + strandat 312.835 kb on + strandat 312.906 kb on + strandat 312.906 kb on + strandat 312.914 kb on - strandat 312.928 kb on + strandat 312.957 kb on + strandat 312.996 kb on + strandat 313.012 kb on + strandat 313.035 kb on - strandat 313.060 kb on + strandat 313.154 kb on + strand, within Atu3286at 313.255 kb on + strand, within Atu3286at 313.327 kb on + strand, within Atu3286at 313.397 kb on - strand, within Atu3286at 313.415 kb on - strand, within Atu3286at 313.487 kb on - strand, within Atu3286at 313.521 kb on + strand, within Atu3286

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Per-strain Table

Position Strand Gene LocusTag Fraction caffeic 5 mM
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309,567 + Atu3283 0.87 +0.7
309,573 - Atu3283 0.88 +0.2
309,575 - Atu3283 0.88 +1.0
309,609 - +0.8
309,678 + -0.4
309,694 - -0.2
309,721 - +1.7
309,833 - Atu3284 0.17 +0.3
309,845 - Atu3284 0.18 +0.0
309,923 + Atu3284 0.27 -0.1
309,923 - Atu3284 0.27 +0.1
309,944 + Atu3284 0.30 -0.4
309,957 - Atu3284 0.31 -0.5
310,019 - Atu3284 0.38 -0.1
310,123 - Atu3284 0.51 +0.2
310,141 - Atu3284 0.53 -0.1
310,144 + Atu3284 0.53 +0.5
310,152 - Atu3284 0.54 -0.6
310,152 - Atu3284 0.54 -1.9
310,154 + Atu3284 0.54 -0.6
310,163 + Atu3284 0.55 +0.2
310,264 + Atu3284 0.67 +0.3
310,264 + Atu3284 0.67 +0.1
310,264 + Atu3284 0.67 +0.2
310,264 + Atu3284 0.67 +0.8
310,264 + Atu3284 0.67 +0.0
310,272 - Atu3284 0.68 +0.2
310,272 - Atu3284 0.68 -1.3
310,332 + Atu3284 0.75 -0.1
310,342 + Atu3284 0.76 +0.8
310,359 + Atu3284 0.78 +0.5
310,511 + +0.2
310,541 + +0.0
310,548 + -1.3
310,556 - +0.8
310,701 + +0.5
310,714 - +0.3
310,716 - +0.6
310,718 + -0.0
310,723 + -0.5
310,731 - +0.6
310,831 + Atu3285 0.14 -0.0
310,981 - Atu3285 0.21 +0.2
311,011 - Atu3285 0.23 -0.9
311,066 + Atu3285 0.25 +0.1
311,124 - Atu3285 0.28 -0.3
311,154 + Atu3285 0.30 -0.0
311,263 + Atu3285 0.35 -0.6
311,320 + Atu3285 0.38 +1.2
311,372 + Atu3285 0.41 -1.8
311,373 + Atu3285 0.41 +0.1
311,380 - Atu3285 0.41 +0.5
311,391 - Atu3285 0.42 +0.8
311,441 + Atu3285 0.44 -0.5
311,441 + Atu3285 0.44 -0.1
311,449 - Atu3285 0.45 +0.8
311,449 - Atu3285 0.45 -0.1
311,633 + Atu3285 0.54 -0.4
311,642 - Atu3285 0.54 -0.0
311,744 + Atu3285 0.59 -0.3
311,795 - Atu3285 0.62 -0.2
311,875 + Atu3285 0.66 -0.3
311,875 + Atu3285 0.66 -0.6
311,883 - Atu3285 0.66 +0.3
311,915 - Atu3285 0.68 -0.1
311,915 - Atu3285 0.68 -0.0
311,972 - Atu3285 0.71 -0.6
311,981 + Atu3285 0.71 +0.5
312,024 - Atu3285 0.73 -0.1
312,039 + Atu3285 0.74 -0.2
312,066 - Atu3285 0.76 +0.0
312,113 + Atu3285 0.78 +0.1
312,121 - Atu3285 0.78 -0.1
312,121 - Atu3285 0.78 -0.0
312,121 - Atu3285 0.78 -0.4
312,156 + Atu3285 0.80 +0.3
312,212 + Atu3285 0.83 -0.5
312,220 - Atu3285 0.83 -0.5
312,303 + Atu3285 0.87 -1.1
312,303 + Atu3285 0.87 +0.2
312,303 + Atu3285 0.87 -0.3
312,303 + Atu3285 0.87 +0.3
312,303 + Atu3285 0.87 +0.2
312,311 - Atu3285 0.88 +0.0
312,311 - Atu3285 0.88 +0.3
312,313 + Atu3285 0.88 -0.3
312,321 - Atu3285 0.88 +0.1
312,321 - Atu3285 0.88 -0.1
312,326 - Atu3285 0.89 -0.4
312,343 - Atu3285 0.89 +0.3
312,415 + +0.3
312,418 + -1.3
312,418 + +0.0
312,492 + +0.4
312,515 - +0.1
312,548 + -0.1
312,548 + +0.2
312,570 - +0.5
312,638 - -0.6
312,651 + -0.1
312,715 - -0.3
312,730 - -0.1
312,790 + -0.2
312,835 + -0.1
312,835 + -0.2
312,906 + +0.1
312,906 + +0.3
312,914 - -1.0
312,928 + +1.1
312,957 + +0.5
312,996 + -0.6
313,012 + +0.0
313,035 - -1.2
313,060 + +0.1
313,154 + Atu3286 0.19 +0.4
313,255 + Atu3286 0.32 +0.0
313,327 + Atu3286 0.41 +0.1
313,397 - Atu3286 0.50 -0.2
313,415 - Atu3286 0.53 +0.4
313,487 - Atu3286 0.62 -0.0
313,521 + Atu3286 0.66 -0.8

Or see this region's nucleotide sequence