Experiment: caffeic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0762 and Atu0763 overlap by 12 nucleotides Atu0763 and Atu0764 are separated by 6 nucleotides Atu0764 and Atu0765 are separated by 192 nucleotides
Atu0762: Atu0762 - hypothetical protein, at 758,574 to 758,882
Atu0762
Atu0763: Atu0763 - hydrolase, at 758,871 to 759,545
Atu0763
Atu0764: Atu0764 - hypothetical protein, at 759,552 to 759,989
Atu0764
Atu0765: Atu0765 - TldD, at 760,182 to 761,597
Atu0765
Position (kb) 759
760 Strain fitness (log2 ratio) -1
0
1 at 758.700 kb on + strand, within Atu0762 at 758.726 kb on - strand, within Atu0762 at 758.831 kb on - strand, within Atu0762 at 758.885 kb on + strand at 759.109 kb on + strand, within Atu0763 at 759.154 kb on + strand, within Atu0763 at 759.188 kb on + strand, within Atu0763 at 759.240 kb on + strand, within Atu0763 at 759.248 kb on + strand, within Atu0763 at 759.248 kb on - strand, within Atu0763 at 759.249 kb on + strand, within Atu0763 at 759.278 kb on + strand, within Atu0763 at 759.281 kb on - strand, within Atu0763 at 759.582 kb on + strand at 759.605 kb on - strand, within Atu0764 at 759.681 kb on + strand, within Atu0764 at 759.807 kb on + strand, within Atu0764 at 759.817 kb on + strand, within Atu0764 at 759.825 kb on - strand, within Atu0764 at 759.832 kb on + strand, within Atu0764 at 759.840 kb on - strand, within Atu0764 at 759.938 kb on - strand, within Atu0764 at 759.998 kb on - strand at 760.003 kb on - strand at 760.063 kb on + strand at 760.098 kb on + strand at 760.101 kb on - strand at 760.105 kb on + strand at 760.132 kb on - strand at 760.174 kb on + strand at 760.180 kb on + strand at 760.182 kb on - strand at 760.182 kb on - strand at 760.214 kb on - strand at 760.218 kb on + strand at 760.226 kb on - strand at 760.396 kb on + strand, within Atu0765 at 760.404 kb on - strand, within Atu0765 at 760.416 kb on - strand, within Atu0765 at 760.564 kb on + strand, within Atu0765 at 760.639 kb on - strand, within Atu0765 at 760.682 kb on - strand, within Atu0765 at 760.709 kb on - strand, within Atu0765 at 760.926 kb on - strand, within Atu0765
Per-strain Table
Position Strand Gene LocusTag Fraction caffeic 5 mM remove 758,700 + Atu0762 0.41 -0.6 758,726 - Atu0762 0.49 -0.1 758,831 - Atu0762 0.83 +0.2 758,885 + +0.1 759,109 + Atu0763 0.35 +0.1 759,154 + Atu0763 0.42 +0.1 759,188 + Atu0763 0.47 -0.3 759,240 + Atu0763 0.55 -0.0 759,248 + Atu0763 0.56 -0.4 759,248 - Atu0763 0.56 +0.2 759,249 + Atu0763 0.56 +0.6 759,278 + Atu0763 0.60 +0.1 759,281 - Atu0763 0.61 -0.3 759,582 + +0.5 759,605 - Atu0764 0.12 +0.8 759,681 + Atu0764 0.29 -0.6 759,807 + Atu0764 0.58 -0.2 759,817 + Atu0764 0.61 +0.2 759,825 - Atu0764 0.62 +0.2 759,832 + Atu0764 0.64 +0.3 759,840 - Atu0764 0.66 +0.7 759,938 - Atu0764 0.88 -0.4 759,998 - +1.0 760,003 - -0.3 760,063 + -0.6 760,098 + +0.1 760,101 - -0.9 760,105 + -0.1 760,132 - +0.3 760,174 + -0.0 760,180 + +0.1 760,182 - +0.0 760,182 - +0.5 760,214 - +0.2 760,218 + +0.0 760,226 - -0.2 760,396 + Atu0765 0.15 +1.0 760,404 - Atu0765 0.16 +0.0 760,416 - Atu0765 0.17 +0.0 760,564 + Atu0765 0.27 +1.1 760,639 - Atu0765 0.32 +0.2 760,682 - Atu0765 0.35 -0.0 760,709 - Atu0765 0.37 +0.2 760,926 - Atu0765 0.53 +1.1
Or see this region's nucleotide sequence