Experiment: carbon source 2-Deoxy-D-glucose 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0627 and PP_0628 are separated by 132 nucleotides PP_0628 and PP_5447 are separated by 55 nucleotides PP_5447 and PP_0629 are separated by 86 nucleotides PP_0629 and PP_0630 are separated by 111 nucleotides
PP_0627: PP_0627 - conserved protein of unknown function, at 735,401 to 735,574
_0627
PP_0628: PP_0628 - conserved protein of unknown function, at 735,707 to 736,336
_0628
PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823
_5447
PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617
_0629
PP_0630: PP_0630 - DNA gyrase inhibitor YacG, at 737,729 to 737,929
_0630
Position (kb) 736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 735.405 kb on - strand at 735.405 kb on - strand at 735.405 kb on - strand at 735.528 kb on + strand, within PP_0627 at 735.528 kb on + strand, within PP_0627 at 735.529 kb on - strand, within PP_0627 at 735.529 kb on - strand, within PP_0627 at 735.591 kb on + strand at 735.659 kb on + strand at 735.677 kb on + strand at 735.678 kb on - strand at 735.722 kb on + strand at 735.722 kb on + strand at 735.723 kb on - strand at 735.846 kb on + strand, within PP_0628 at 735.847 kb on - strand, within PP_0628 at 736.204 kb on - strand, within PP_0628 at 736.261 kb on + strand, within PP_0628 at 736.262 kb on - strand, within PP_0628 at 736.306 kb on + strand at 736.307 kb on - strand at 736.307 kb on - strand at 736.320 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.369 kb on - strand at 736.475 kb on + strand, within PP_5447 at 736.475 kb on + strand, within PP_5447 at 736.509 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.538 kb on - strand, within PP_5447 at 736.538 kb on - strand, within PP_5447 at 736.613 kb on - strand, within PP_5447 at 736.724 kb on - strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.794 kb on + strand at 736.892 kb on - strand at 736.892 kb on - strand at 736.903 kb on + strand at 736.903 kb on + strand at 736.925 kb on - strand at 736.925 kb on - strand at 736.988 kb on + strand, within PP_0629 at 736.989 kb on - strand, within PP_0629 at 737.135 kb on + strand, within PP_0629 at 737.144 kb on - strand, within PP_0629 at 737.297 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.354 kb on - strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.582 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.757 kb on + strand, within PP_0630
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source 2-Deoxy-D-glucose 100 mM remove 735,405 - -1.9 735,405 - -2.1 735,405 - -0.7 735,528 + PP_0627 0.73 -1.8 735,528 + PP_0627 0.73 +0.3 735,529 - PP_0627 0.74 +1.1 735,529 - PP_0627 0.74 +0.5 735,591 + +0.5 735,659 + -2.1 735,677 + +0.5 735,678 - +0.5 735,722 + -0.5 735,722 + +1.5 735,723 - -0.3 735,846 + PP_0628 0.22 +1.2 735,847 - PP_0628 0.22 +3.8 736,204 - PP_0628 0.79 +0.1 736,261 + PP_0628 0.88 +2.7 736,262 - PP_0628 0.88 -3.5 736,306 + +0.5 736,307 - +0.1 736,307 - +0.7 736,320 + -0.4 736,368 + +3.7 736,368 + -1.1 736,368 + +0.9 736,368 + -2.8 736,368 + -0.0 736,368 + +0.5 736,368 + +0.0 736,368 + -0.5 736,369 - +1.5 736,475 + PP_5447 0.19 -0.8 736,475 + PP_5447 0.19 -0.9 736,509 + PP_5447 0.27 +0.5 736,537 + PP_5447 0.34 -3.7 736,537 + PP_5447 0.34 +0.7 736,537 + PP_5447 0.34 +0.2 736,538 - PP_5447 0.34 +0.4 736,538 - PP_5447 0.34 -0.6 736,613 - PP_5447 0.51 +0.1 736,724 - PP_5447 0.77 -0.1 736,761 + PP_5447 0.85 -1.2 736,761 + PP_5447 0.85 -0.6 736,794 + -1.7 736,892 - -0.8 736,892 - -0.3 736,903 + +0.2 736,903 + +0.5 736,925 - +1.5 736,925 - +0.2 736,988 + PP_0629 0.11 -1.1 736,989 - PP_0629 0.11 +0.4 737,135 + PP_0629 0.32 +0.1 737,144 - PP_0629 0.33 -0.6 737,297 - PP_0629 0.55 -0.9 737,314 - PP_0629 0.57 -0.9 737,314 - PP_0629 0.57 +0.5 737,354 - PP_0629 0.63 -0.3 737,526 + PP_0629 0.87 +0.1 737,526 + PP_0629 0.87 +0.5 737,526 + PP_0629 0.87 -1.0 737,582 + +0.3 737,714 + -0.1 737,714 + -2.9 737,714 + -1.8 737,714 + +0.5 737,715 - +0.9 737,715 - +0.5 737,715 - -0.5 737,757 + PP_0630 0.14 +0.8
Or see this region's nucleotide sequence