Strain Fitness in Agrobacterium fabrum C58 around Atu6038

Experiment: Indole-3-pyruvic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6035 and Atu6036 overlap by 7 nucleotidesAtu6036 and Atu6037 overlap by 4 nucleotidesAtu6037 and Atu6038 overlap by 29 nucleotidesAtu6038 and Atu6039 are separated by 10 nucleotidesAtu6039 and Atu6040 overlap by 8 nucleotidesAtu6040 and Atu6041 overlap by 11 nucleotides Atu6035: Atu6035 - conjugal transfer protein, at 44,924 to 46,120 Atu6035 Atu6036: Atu6036 - entry-exclusion protein, at 46,114 to 46,332 Atu6036 Atu6037: Atu6037 - conjugal transfer protein, at 46,329 to 47,132 Atu6037 Atu6038: Atu6038 - conjugal transfer protein, at 47,104 to 49,572 Atu6038 Atu6039: Atu6039 - conjugal transfer protein, at 49,583 to 49,882 Atu6039 Atu6040: Atu6040 - conjugal transfer protein, at 49,875 to 50,276 Atu6040 Atu6041: Atu6041 - conjugal transfer protein, at 50,266 to 51,237 Atu6041 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 46.114 kb on + strandat 46.190 kb on - strand, within Atu6036at 46.209 kb on + strand, within Atu6036at 46.338 kb on - strandat 46.338 kb on - strandat 46.338 kb on - strandat 46.389 kb on - strandat 46.430 kb on - strand, within Atu6037at 46.440 kb on - strand, within Atu6037at 46.440 kb on - strand, within Atu6037at 46.492 kb on - strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.537 kb on + strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.545 kb on - strand, within Atu6037at 46.560 kb on + strand, within Atu6037at 46.562 kb on + strand, within Atu6037at 46.570 kb on - strand, within Atu6037at 46.570 kb on - strand, within Atu6037at 46.582 kb on + strand, within Atu6037at 46.664 kb on + strand, within Atu6037at 46.682 kb on - strand, within Atu6037at 46.773 kb on - strand, within Atu6037at 46.809 kb on + strand, within Atu6037at 46.826 kb on + strand, within Atu6037at 46.831 kb on + strand, within Atu6037at 46.843 kb on + strand, within Atu6037at 46.843 kb on + strand, within Atu6037at 46.870 kb on + strand, within Atu6037at 46.916 kb on + strand, within Atu6037at 46.928 kb on + strand, within Atu6037at 46.988 kb on + strand, within Atu6037at 47.009 kb on + strand, within Atu6037at 47.066 kb on + strandat 47.074 kb on - strandat 47.074 kb on - strandat 47.077 kb on + strandat 47.082 kb on + strandat 47.085 kb on - strandat 47.090 kb on - strandat 47.160 kb on + strandat 47.204 kb on + strandat 47.214 kb on - strandat 47.214 kb on - strandat 47.282 kb on - strandat 47.304 kb on - strandat 47.322 kb on + strandat 47.380 kb on + strand, within Atu6038at 47.412 kb on + strand, within Atu6038at 47.420 kb on - strand, within Atu6038at 47.420 kb on - strand, within Atu6038at 47.491 kb on + strand, within Atu6038at 47.491 kb on + strand, within Atu6038at 47.524 kb on + strand, within Atu6038at 47.598 kb on + strand, within Atu6038at 47.598 kb on + strand, within Atu6038at 47.606 kb on + strand, within Atu6038at 47.606 kb on - strand, within Atu6038at 47.611 kb on + strand, within Atu6038at 47.619 kb on - strand, within Atu6038at 47.628 kb on - strand, within Atu6038at 47.628 kb on - strand, within Atu6038at 47.647 kb on - strand, within Atu6038at 47.709 kb on - strand, within Atu6038at 47.771 kb on + strand, within Atu6038at 47.771 kb on + strand, within Atu6038at 47.771 kb on + strand, within Atu6038at 47.779 kb on - strand, within Atu6038at 47.779 kb on - strand, within Atu6038at 47.790 kb on + strand, within Atu6038at 47.798 kb on - strand, within Atu6038at 47.811 kb on - strand, within Atu6038at 47.832 kb on - strand, within Atu6038at 47.832 kb on - strand, within Atu6038at 47.878 kb on + strand, within Atu6038at 47.889 kb on + strand, within Atu6038at 47.945 kb on + strand, within Atu6038at 47.966 kb on + strand, within Atu6038at 48.093 kb on - strand, within Atu6038at 48.104 kb on - strand, within Atu6038at 48.222 kb on + strand, within Atu6038at 48.299 kb on - strand, within Atu6038at 48.303 kb on - strand, within Atu6038at 48.332 kb on + strand, within Atu6038at 48.347 kb on - strand, within Atu6038at 48.356 kb on + strand, within Atu6038at 48.455 kb on + strand, within Atu6038at 48.473 kb on - strand, within Atu6038at 48.515 kb on + strand, within Atu6038at 48.589 kb on - strand, within Atu6038at 48.593 kb on + strand, within Atu6038at 48.634 kb on + strand, within Atu6038at 48.642 kb on - strand, within Atu6038at 48.673 kb on - strand, within Atu6038at 48.726 kb on - strand, within Atu6038at 48.768 kb on + strand, within Atu6038at 48.774 kb on + strand, within Atu6038at 48.782 kb on - strand, within Atu6038at 48.784 kb on + strand, within Atu6038at 48.784 kb on + strand, within Atu6038at 48.792 kb on - strand, within Atu6038at 48.871 kb on + strand, within Atu6038at 48.932 kb on + strand, within Atu6038at 48.932 kb on + strand, within Atu6038at 48.940 kb on - strand, within Atu6038at 48.945 kb on - strand, within Atu6038at 48.975 kb on + strand, within Atu6038at 49.023 kb on + strand, within Atu6038at 49.102 kb on - strand, within Atu6038at 49.150 kb on - strand, within Atu6038at 49.161 kb on + strand, within Atu6038at 49.170 kb on + strand, within Atu6038at 49.176 kb on + strand, within Atu6038at 49.179 kb on - strand, within Atu6038at 49.205 kb on - strand, within Atu6038at 49.205 kb on - strand, within Atu6038at 49.355 kb on - strandat 49.355 kb on - strandat 49.506 kb on + strandat 49.514 kb on - strandat 49.514 kb on - strandat 49.526 kb on - strandat 49.547 kb on + strandat 49.653 kb on - strand, within Atu6039at 49.757 kb on + strand, within Atu6039at 49.784 kb on + strand, within Atu6039at 49.837 kb on - strand, within Atu6039at 49.869 kb on - strandat 49.870 kb on - strandat 49.876 kb on + strandat 49.954 kb on - strand, within Atu6040at 49.980 kb on - strand, within Atu6040at 49.985 kb on - strand, within Atu6040at 49.994 kb on + strand, within Atu6040at 50.006 kb on + strand, within Atu6040at 50.012 kb on - strand, within Atu6040at 50.019 kb on + strand, within Atu6040at 50.054 kb on + strand, within Atu6040at 50.191 kb on - strand, within Atu6040at 50.193 kb on + strand, within Atu6040at 50.260 kb on - strandat 50.302 kb on + strandat 50.309 kb on + strandat 50.317 kb on - strandat 50.317 kb on - strandat 50.369 kb on - strand, within Atu6041at 50.450 kb on - strand, within Atu6041at 50.494 kb on - strand, within Atu6041at 50.527 kb on + strand, within Atu6041at 50.534 kb on + strand, within Atu6041at 50.534 kb on + strand, within Atu6041at 50.534 kb on + strand, within Atu6041at 50.542 kb on - strand, within Atu6041at 50.568 kb on + strand, within Atu6041

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Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM
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46,114 + -0.1
46,190 - Atu6036 0.35 -0.8
46,209 + Atu6036 0.43 +0.4
46,338 - +0.4
46,338 - -0.1
46,338 - -0.1
46,389 - +0.0
46,430 - Atu6037 0.13 +0.3
46,440 - Atu6037 0.14 -0.3
46,440 - Atu6037 0.14 +0.3
46,492 - Atu6037 0.20 -0.1
46,537 + Atu6037 0.26 -0.1
46,537 + Atu6037 0.26 -0.0
46,537 + Atu6037 0.26 -0.2
46,545 - Atu6037 0.27 +0.3
46,545 - Atu6037 0.27 +1.6
46,545 - Atu6037 0.27 +0.1
46,545 - Atu6037 0.27 +0.6
46,545 - Atu6037 0.27 +0.6
46,545 - Atu6037 0.27 +0.2
46,560 + Atu6037 0.29 -1.7
46,562 + Atu6037 0.29 -0.6
46,570 - Atu6037 0.30 -0.0
46,570 - Atu6037 0.30 -0.0
46,582 + Atu6037 0.31 +0.3
46,664 + Atu6037 0.42 +0.4
46,682 - Atu6037 0.44 -0.0
46,773 - Atu6037 0.55 +0.5
46,809 + Atu6037 0.60 +0.4
46,826 + Atu6037 0.62 +0.2
46,831 + Atu6037 0.62 -0.2
46,843 + Atu6037 0.64 +0.5
46,843 + Atu6037 0.64 -0.3
46,870 + Atu6037 0.67 +0.5
46,916 + Atu6037 0.73 +0.1
46,928 + Atu6037 0.75 -0.5
46,988 + Atu6037 0.82 +0.2
47,009 + Atu6037 0.85 -0.3
47,066 + +0.2
47,074 - -0.1
47,074 - -0.0
47,077 + +0.1
47,082 + +0.0
47,085 - -0.1
47,090 - +0.5
47,160 + -0.3
47,204 + -0.0
47,214 - -1.0
47,214 - -0.1
47,282 - -0.3
47,304 - +0.3
47,322 + -0.2
47,380 + Atu6038 0.11 +0.6
47,412 + Atu6038 0.12 +0.9
47,420 - Atu6038 0.13 +0.0
47,420 - Atu6038 0.13 -0.0
47,491 + Atu6038 0.16 +0.2
47,491 + Atu6038 0.16 +0.1
47,524 + Atu6038 0.17 -0.8
47,598 + Atu6038 0.20 +0.0
47,598 + Atu6038 0.20 +0.3
47,606 + Atu6038 0.20 +0.3
47,606 - Atu6038 0.20 -0.4
47,611 + Atu6038 0.21 +1.3
47,619 - Atu6038 0.21 -0.6
47,628 - Atu6038 0.21 -0.4
47,628 - Atu6038 0.21 +0.3
47,647 - Atu6038 0.22 +0.6
47,709 - Atu6038 0.25 +0.1
47,771 + Atu6038 0.27 -0.5
47,771 + Atu6038 0.27 -0.2
47,771 + Atu6038 0.27 +0.9
47,779 - Atu6038 0.27 +1.2
47,779 - Atu6038 0.27 +0.1
47,790 + Atu6038 0.28 -0.2
47,798 - Atu6038 0.28 -0.5
47,811 - Atu6038 0.29 +0.3
47,832 - Atu6038 0.29 +0.1
47,832 - Atu6038 0.29 +0.5
47,878 + Atu6038 0.31 +0.1
47,889 + Atu6038 0.32 +0.3
47,945 + Atu6038 0.34 +0.1
47,966 + Atu6038 0.35 +0.1
48,093 - Atu6038 0.40 +1.2
48,104 - Atu6038 0.41 +0.1
48,222 + Atu6038 0.45 +0.2
48,299 - Atu6038 0.48 -0.2
48,303 - Atu6038 0.49 +0.6
48,332 + Atu6038 0.50 -0.3
48,347 - Atu6038 0.50 +0.1
48,356 + Atu6038 0.51 +0.1
48,455 + Atu6038 0.55 -0.1
48,473 - Atu6038 0.55 +0.2
48,515 + Atu6038 0.57 +0.3
48,589 - Atu6038 0.60 +0.2
48,593 + Atu6038 0.60 -0.0
48,634 + Atu6038 0.62 +0.2
48,642 - Atu6038 0.62 -0.3
48,673 - Atu6038 0.64 +0.0
48,726 - Atu6038 0.66 +0.3
48,768 + Atu6038 0.67 +0.4
48,774 + Atu6038 0.68 +0.1
48,782 - Atu6038 0.68 +0.1
48,784 + Atu6038 0.68 +1.3
48,784 + Atu6038 0.68 +0.4
48,792 - Atu6038 0.68 -0.1
48,871 + Atu6038 0.72 -1.0
48,932 + Atu6038 0.74 -2.1
48,932 + Atu6038 0.74 -0.0
48,940 - Atu6038 0.74 -0.3
48,945 - Atu6038 0.75 +0.1
48,975 + Atu6038 0.76 +0.1
49,023 + Atu6038 0.78 +0.1
49,102 - Atu6038 0.81 +0.4
49,150 - Atu6038 0.83 +0.3
49,161 + Atu6038 0.83 +0.8
49,170 + Atu6038 0.84 -0.0
49,176 + Atu6038 0.84 +1.0
49,179 - Atu6038 0.84 -0.1
49,205 - Atu6038 0.85 +0.4
49,205 - Atu6038 0.85 +0.1
49,355 - +0.1
49,355 - +0.1
49,506 + -0.1
49,514 - -0.3
49,514 - -0.2
49,526 - +0.3
49,547 + +0.1
49,653 - Atu6039 0.23 +0.2
49,757 + Atu6039 0.58 -0.1
49,784 + Atu6039 0.67 +0.2
49,837 - Atu6039 0.85 +0.2
49,869 - -0.0
49,870 - -2.0
49,876 + +0.7
49,954 - Atu6040 0.20 +0.1
49,980 - Atu6040 0.26 +0.7
49,985 - Atu6040 0.27 -0.2
49,994 + Atu6040 0.30 +0.2
50,006 + Atu6040 0.33 -0.3
50,012 - Atu6040 0.34 -0.4
50,019 + Atu6040 0.36 +0.3
50,054 + Atu6040 0.45 +0.1
50,191 - Atu6040 0.79 +0.3
50,193 + Atu6040 0.79 -0.3
50,260 - +0.2
50,302 + +0.5
50,309 + -0.4
50,317 - -0.4
50,317 - -0.0
50,369 - Atu6041 0.11 +0.1
50,450 - Atu6041 0.19 +0.1
50,494 - Atu6041 0.23 -0.4
50,527 + Atu6041 0.27 +0.0
50,534 + Atu6041 0.28 +0.1
50,534 + Atu6041 0.28 -0.7
50,534 + Atu6041 0.28 -0.2
50,542 - Atu6041 0.28 +0.8
50,568 + Atu6041 0.31 -0.1

Or see this region's nucleotide sequence