Strain Fitness in Agrobacterium fabrum C58 around Atu4892

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
2,067,147	+		Atu4890	0.67	-1.2
2,067,924	+				-0.2
2,067,976	+				-0.4
2,067,984	-				+0.9
2,067,996	+				-2.3
2,067,996	+				+0.5
2,067,996	-				-1.1
2,068,133	+				-0.1
2,068,141	-				-0.9
2,068,205	+				+0.5
2,068,213	-				+0.4
2,068,218	-				-0.5
2,068,221	+				-0.9
2,068,222	-				-1.1
2,068,291	-		Atu4892	0.10	-0.8
2,068,312	+		Atu4892	0.11	-0.7
2,068,393	-		Atu4892	0.15	-0.4
2,068,451	-		Atu4892	0.18	-0.7
2,068,532	+		Atu4892	0.22	-0.2
2,068,541	+		Atu4892	0.22	+0.4
2,068,541	+		Atu4892	0.22	-0.2
2,068,554	+		Atu4892	0.23	-0.8
2,068,562	-		Atu4892	0.23	+0.0
2,068,594	-		Atu4892	0.25	+0.6
2,068,604	-		Atu4892	0.25	-1.0
2,068,604	-		Atu4892	0.25	-0.3
2,068,604	-		Atu4892	0.25	-0.5
2,068,604	-		Atu4892	0.25	-0.4
2,068,606	-		Atu4892	0.25	-1.0
2,068,612	+		Atu4892	0.26	-2.8
2,068,620	-		Atu4892	0.26	-0.2
2,068,620	-		Atu4892	0.26	-0.1
2,068,665	+		Atu4892	0.28	-1.0
2,068,673	-		Atu4892	0.29	+1.9
2,068,683	+		Atu4892	0.29	+0.8
2,068,790	+		Atu4892	0.34	-1.3
2,068,790	+		Atu4892	0.34	-1.0
2,068,790	+		Atu4892	0.34	+1.4
2,068,790	+		Atu4892	0.34	-0.0
2,068,790	+		Atu4892	0.34	-0.5
2,068,798	-		Atu4892	0.35	-1.1
2,068,798	-		Atu4892	0.35	-0.0
2,068,798	-		Atu4892	0.35	-0.9
2,068,806	+		Atu4892	0.35	-0.6
2,068,812	+		Atu4892	0.35	+1.0
2,068,821	-		Atu4892	0.36	-0.2
2,068,966	+		Atu4892	0.43	+0.5
2,069,000	+		Atu4892	0.44	+2.4
2,069,051	+		Atu4892	0.47	+0.8
2,069,189	+		Atu4892	0.53	-0.8
2,069,308	+		Atu4892	0.59	+0.6
2,069,354	+		Atu4892	0.61	-0.2
2,069,363	-		Atu4892	0.62	-0.2
2,069,470	-		Atu4892	0.67	-1.2
2,069,478	-		Atu4892	0.67	-1.2
2,069,481	-		Atu4892	0.67	-0.3
2,069,481	-		Atu4892	0.67	+0.9
2,069,493	+		Atu4892	0.68	+1.4
2,069,666	-		Atu4892	0.76	-1.4
2,069,776	+		Atu4892	0.81	-0.6
2,069,802	+		Atu4892	0.82	+0.8
2,069,802	+		Atu4892	0.82	-0.3
2,069,810	-		Atu4892	0.83	-0.2
2,069,972	-				-0.9
2,070,040	+				+0.4
2,070,051	-				-0.6
2,070,179	-				-0.5
2,070,344	+		Atu4893	0.25	-1.1
2,070,350	-		Atu4893	0.26	-0.4
2,070,352	-		Atu4893	0.26	-1.5
2,070,352	-		Atu4893	0.26	-2.6
2,070,536	+		Atu4893	0.52	-0.2
2,070,544	+		Atu4893	0.53	-0.3
2,070,554	+		Atu4893	0.55	+1.4
2,070,562	-		Atu4893	0.56	+0.0
2,070,562	-		Atu4893	0.56	-1.7
2,070,649	+		Atu4893	0.68	-1.2
2,070,651	+		Atu4893	0.68	+0.0
2,070,901	+				-0.5
2,070,910	-				-0.2
2,070,975	+				+0.1
2,071,064	+				-0.5
2,071,064	+				+0.5
2,071,139	-				+0.8
2,071,143	+				+0.4