Strain Fitness in Agrobacterium fabrum C58 around Atu1014

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,009,450	+				+1.1
1,009,505	+				+0.5
1,009,505	+				-0.2
1,009,599	+		Atu1014	0.20	-0.4
1,009,612	+		Atu1014	0.21	-0.2
1,009,646	+		Atu1014	0.26	-0.2
1,009,692	-		Atu1014	0.31	-1.0
1,009,719	-		Atu1014	0.35	-0.4
1,009,727	-		Atu1014	0.36	+0.6
1,009,761	+		Atu1014	0.40	+0.5
1,009,761	+		Atu1014	0.40	+0.3
1,009,764	-		Atu1014	0.40	-1.0
1,009,764	-		Atu1014	0.40	+0.3
1,009,766	+		Atu1014	0.41	-0.3
1,009,766	+		Atu1014	0.41	-0.1
1,009,769	-		Atu1014	0.41	+0.1
1,009,769	-		Atu1014	0.41	-0.1
1,009,818	-		Atu1014	0.47	+0.7
1,009,879	-		Atu1014	0.55	-0.4
1,009,879	-		Atu1014	0.55	+0.5
1,009,997	-		Atu1014	0.69	+0.3
1,010,064	+		Atu1014	0.78	+0.0
1,010,133	+		Atu1014	0.86	+1.0
1,010,245	+				+1.8
1,010,314	+				+0.2
1,010,344	+				-0.3
1,010,393	+				-0.2
1,010,394	+				+1.5
1,010,405	+				-0.1
1,010,453	+				-0.3
1,010,471	-				-0.3
1,010,476	-				+0.1
1,010,479	-				+0.3
1,010,537	-				-0.3
1,010,546	+		Atu8146	0.11	+0.2
1,010,549	-		Atu8146	0.12	+0.0
1,010,564	+		Atu8146	0.16	+0.0
1,010,572	-		Atu8146	0.19	+0.1
1,010,572	-		Atu8146	0.19	+0.1
1,010,572	-		Atu8146	0.19	+0.3
1,010,622	-		Atu8146	0.33	+0.2
1,010,641	-		Atu8146	0.39	-0.3
1,010,650	+		Atu8146	0.42	-0.7
1,010,836	-				+0.4
1,010,836	-				+0.2
1,010,838	+				-0.1
1,010,847	+				+0.9
1,010,863	-				-0.4
1,010,919	+				+0.0
1,010,927	-				+0.1
1,010,946	-				+0.1
1,011,178	-				+0.2