Strain Fitness in Agrobacterium fabrum C58 around Atu0017

Experiment: Indole-3-pyruvic 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0015 and Atu0016 are separated by 69 nucleotidesAtu0016 and Atu0017 are separated by 102 nucleotidesAtu0017 and Atu0018 are separated by 1 nucleotides Atu0015: Atu0015 - intracellular PHB depolymerase, at 12,339 to 13,535 Atu0015 Atu0016: Atu0016 - hypothetical protein, at 13,605 to 14,372 Atu0016 Atu0017: Atu0017 - N-(5-phosphoribosyl) anthranilate isomerase, at 14,475 to 15,137 Atu0017 Atu0018: Atu0018 - tryptophan synthase beta subunit, at 15,139 to 16,359 Atu0018 Position (kb) 14 15 16Strain fitness (log2 ratio) -1 0 1at 13.483 kb on + strandat 13.609 kb on - strandat 14.690 kb on - strand, within Atu0017at 14.703 kb on + strand, within Atu0017at 14.819 kb on + strand, within Atu0017at 14.946 kb on - strand, within Atu0017at 14.987 kb on + strand, within Atu0017at 15.033 kb on - strand, within Atu0017

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM
remove
13,483 + +0.1
13,609 - +0.1
14,690 - Atu0017 0.32 -0.7
14,703 + Atu0017 0.34 +0.1
14,819 + Atu0017 0.52 +1.5
14,946 - Atu0017 0.71 -0.2
14,987 + Atu0017 0.77 -1.0
15,033 - Atu0017 0.84 -0.8

Or see this region's nucleotide sequence