Strain Fitness in Pseudomonas putida KT2440 around PP_5370

Experiment: carbon source 2-Deoxy-D-glucose 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	carbon source 2-Deoxy-D-glucose 50 mM
6,118,433	+		PP_5368	0.49	-2.2
6,118,434	-		PP_5368	0.49	-1.4
6,118,442	-		PP_5368	0.49	+1.8
6,118,442	-		PP_5368	0.49	-2.1
6,118,442	-		PP_5368	0.49	+1.1
6,118,593	+		PP_5368	0.62	-1.4
6,118,593	+		PP_5368	0.62	-0.3
6,118,609	+		PP_5368	0.64	-1.5
6,118,609	+		PP_5368	0.64	+0.2
6,118,609	+		PP_5368	0.64	+0.8
6,118,610	-		PP_5368	0.64	+0.4
6,118,610	-		PP_5368	0.64	+1.9
6,118,610	-		PP_5368	0.64	+0.1
6,118,610	-		PP_5368	0.64	-1.1
6,118,610	-		PP_5368	0.64	+1.5
6,118,624	+		PP_5368	0.65	-0.4
6,118,624	+		PP_5368	0.65	-1.1
6,118,624	+		PP_5368	0.65	-0.5
6,118,625	-		PP_5368	0.65	+0.2
6,118,625	-		PP_5368	0.65	+2.2
6,118,625	-		PP_5368	0.65	+0.9
6,118,625	-		PP_5368	0.65	-0.6
6,118,625	-		PP_5368	0.65	+0.7
6,118,625	-		PP_5368	0.65	-1.9
6,118,625	-		PP_5368	0.65	-0.5
6,118,746	+		PP_5368	0.76	-2.1
6,118,746	+		PP_5368	0.76	-0.3
6,118,747	-		PP_5368	0.76	+0.3
6,118,889	+		PP_5368	0.88	-1.1
6,118,890	-		PP_5368	0.88	-0.5
6,118,905	+		PP_5368	0.89	+0.5
6,118,905	+		PP_5368	0.89	-0.1
6,118,906	-		PP_5368	0.89	-1.3
6,118,945	+				-2.3
6,118,945	+				-2.1
6,118,945	+				+1.5
6,118,945	+				+0.0
6,118,945	+				+0.3
6,118,946	-				-2.1
6,118,946	-				+0.7
6,118,946	-				-1.3
6,118,993	+				-0.2
6,118,993	+				+1.0
6,118,994	-				+2.0
6,118,994	-				+0.3
6,118,994	-				+0.5
6,119,017	-				+1.5
6,119,056	-				+0.7
6,119,104	+				+0.1
6,119,104	+				-1.1
6,119,105	-				+0.2
6,119,105	-				+1.1
6,119,105	-				-0.8
6,119,128	+				-0.3
6,119,128	+				+0.1
6,119,128	+				+0.5
6,119,129	-				-1.7
6,119,129	-				-0.8
6,119,182	+				+0.1
6,119,242	+				-0.4
6,119,242	+				-0.2
6,119,243	-				+0.7
6,119,332	-				-1.3
6,119,429	+				+1.5
6,119,429	+				-0.5
6,119,430	-				-0.0
6,119,430	-				+3.3
6,119,430	-				-0.3
6,119,440	+				-0.6
6,119,440	+				+0.1
6,119,441	-				+0.5
6,119,441	-				-2.3
6,119,441	-				+0.3
6,119,483	-				+0.1
6,119,641	-		PP_5370	0.16	-0.2
6,119,668	-		PP_5370	0.18	-1.0
6,119,674	+		PP_5370	0.19	-0.9
6,119,675	-		PP_5370	0.19	-1.5
6,119,694	+		PP_5370	0.20	-0.4
6,119,694	+		PP_5370	0.20	-1.2
6,119,695	-		PP_5370	0.20	+0.3
6,119,695	-		PP_5370	0.20	-1.4
6,119,695	-		PP_5370	0.20	-0.8
6,119,710	+		PP_5370	0.21	+1.9
6,119,717	-		PP_5370	0.22	+0.2
6,119,801	+		PP_5370	0.28	-1.2
6,119,802	-		PP_5370	0.28	+0.5
6,119,832	+		PP_5370	0.31	-3.1
6,119,832	+		PP_5370	0.31	-2.9
6,119,833	-		PP_5370	0.31	-1.4
6,119,833	-		PP_5370	0.31	-0.8
6,119,833	-		PP_5370	0.31	-0.5
6,119,833	-		PP_5370	0.31	+0.5
6,119,836	+		PP_5370	0.31	-0.7
6,119,836	+		PP_5370	0.31	-0.1
6,119,836	+		PP_5370	0.31	-1.5
6,119,836	+		PP_5370	0.31	-0.7
6,119,836	+		PP_5370	0.31	+2.1
6,119,837	-		PP_5370	0.31	-0.8
6,119,837	-		PP_5370	0.31	-2.7
6,120,006	+		PP_5370	0.44	+2.6
6,120,007	-		PP_5370	0.44	+1.5
6,120,044	+		PP_5370	0.47	-1.1
6,120,044	+		PP_5370	0.47	+0.1
6,120,045	-		PP_5370	0.47	-2.6
6,120,163	+		PP_5370	0.55	-1.9
6,120,176	+		PP_5370	0.56	-1.5
6,120,176	+		PP_5370	0.56	+0.5
6,120,177	-		PP_5370	0.57	+0.8
6,120,177	-		PP_5370	0.57	-1.5
6,120,202	-		PP_5370	0.58	+0.3
6,120,202	-		PP_5370	0.58	+0.5
6,120,216	+		PP_5370	0.59	-1.2
6,120,216	+		PP_5370	0.59	-0.5
6,120,217	-		PP_5370	0.60	-0.3
6,120,232	-		PP_5370	0.61	-1.3
6,120,234	+		PP_5370	0.61	-0.4
6,120,248	+		PP_5370	0.62	-0.1
6,120,248	+		PP_5370	0.62	+0.5
6,120,257	+		PP_5370	0.63	-0.4
6,120,257	+		PP_5370	0.63	-0.2
6,120,257	+		PP_5370	0.63	+3.9
6,120,361	-		PP_5370	0.70	-2.5
6,120,460	+		PP_5370	0.78	+2.5
6,120,460	+		PP_5370	0.78	-1.2
6,120,461	-		PP_5370	0.78	-0.9
6,120,461	-		PP_5370	0.78	-1.9
6,120,461	-		PP_5370	0.78	-0.1
6,120,561	-		PP_5370	0.85	+0.5
6,120,561	-		PP_5370	0.85	+0.3
6,120,645	+				+3.1
6,120,645	+				+0.5
6,120,646	-				+0.1
6,120,646	-				-1.4
6,120,655	+				+0.1
6,120,655	+				-1.9
6,120,655	+				+0.3
6,120,656	-				+3.1
6,120,668	+				-0.9
6,120,705	+				+0.9
6,120,706	-				-1.2
6,120,745	+				-0.5
6,120,746	-				+0.6
6,120,809	-				+2.2
6,121,068	+		PP_5371	0.22	+0.7
6,121,068	+		PP_5371	0.22	-0.8
6,121,069	-		PP_5371	0.22	-0.0
6,121,113	+		PP_5371	0.25	+1.0
6,121,113	+		PP_5371	0.25	-0.2
6,121,113	+		PP_5371	0.25	+1.1
6,121,114	-		PP_5371	0.25	-1.1
6,121,114	-		PP_5371	0.25	-0.0
6,121,114	-		PP_5371	0.25	+1.5
6,121,114	-		PP_5371	0.25	+1.1
6,121,136	+		PP_5371	0.27	-1.4
6,121,136	+		PP_5371	0.27	-1.6
6,121,136	+		PP_5371	0.27	+1.3
6,121,136	+		PP_5371	0.27	-1.6
6,121,136	+		PP_5371	0.27	+1.5
6,121,136	+		PP_5371	0.27	+1.1
6,121,136	+		PP_5371	0.27	+0.4
6,121,136	+		PP_5371	0.27	-1.7
6,121,136	+		PP_5371	0.27	-0.9
6,121,137	-		PP_5371	0.27	+0.1
6,121,137	-		PP_5371	0.27	-0.1
6,121,137	-		PP_5371	0.27	-0.3
6,121,137	-		PP_5371	0.27	+1.6
6,121,425	+		PP_5371	0.48	-1.0
6,121,425	+		PP_5371	0.48	+0.3
6,121,607	+		PP_5371	0.61	+0.5
6,121,624	-		PP_5371	0.62	-1.1
6,121,647	+		PP_5371	0.64	+1.0
6,121,648	-		PP_5371	0.64	-0.9
6,121,648	-		PP_5371	0.64	-1.1
6,121,648	-		PP_5371	0.64	-1.4
6,121,648	-		PP_5371	0.64	-0.7
6,121,694	-		PP_5371	0.67	-0.6
6,121,695	+		PP_5371	0.67	+0.6
6,121,695	+		PP_5371	0.67	-1.8
6,121,695	+		PP_5371	0.67	-1.5
6,121,695	+		PP_5371	0.67	+1.1
6,121,695	+		PP_5371	0.67	-1.9
6,121,695	+		PP_5371	0.67	-0.3
6,121,696	-		PP_5371	0.67	-0.5
6,121,696	-		PP_5371	0.67	-0.6
6,121,699	+		PP_5371	0.67	+0.5
6,121,699	+		PP_5371	0.67	+0.5
6,121,699	+		PP_5371	0.67	-0.5
6,121,700	-		PP_5371	0.68	+0.7
6,121,700	-		PP_5371	0.68	-1.2