Experiment: carbon source 2-Deoxy-D-glucose 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4966 and PP_4967 are separated by 18 nucleotides PP_4967 and PP_4968 are separated by 228 nucleotides
PP_4966: PP_4966 - transcriptional regulator of methionine metabolism, at 5,657,946 to 5,658,938
_4966
PP_4967: PP_4967 - methionine adenosyltransferase, at 5,658,957 to 5,660,147
_4967
PP_4968: PP_4968 - DNA ligase B, at 5,660,376 to 5,662,076
_4968
Position (kb) 5658
5659
5660
5661 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5658.034 kb on + strand at 5658.034 kb on + strand at 5658.180 kb on + strand, within PP_4966 at 5658.180 kb on + strand, within PP_4966 at 5658.533 kb on + strand, within PP_4966 at 5658.861 kb on + strand at 5658.861 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5658.925 kb on + strand at 5660.146 kb on - strand at 5660.211 kb on + strand at 5660.294 kb on + strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.295 kb on - strand at 5660.338 kb on - strand at 5660.382 kb on + strand at 5660.383 kb on - strand at 5660.404 kb on + strand at 5660.405 kb on - strand at 5660.405 kb on - strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.520 kb on + strand at 5660.536 kb on + strand at 5660.536 kb on + strand at 5660.537 kb on - strand at 5660.560 kb on - strand, within PP_4968 at 5660.779 kb on - strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.824 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.919 kb on + strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5660.920 kb on - strand, within PP_4968 at 5661.127 kb on - strand, within PP_4968
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source 2-Deoxy-D-glucose 50 mM remove 5,658,034 + +2.1 5,658,034 + -1.4 5,658,180 + PP_4966 0.24 -2.1 5,658,180 + PP_4966 0.24 -2.2 5,658,533 + PP_4966 0.59 -0.1 5,658,861 + +2.5 5,658,861 + +0.3 5,658,925 + -2.3 5,658,925 + +0.6 5,658,925 + -0.1 5,658,925 + +0.2 5,658,925 + -0.2 5,660,146 - -2.4 5,660,211 + +1.0 5,660,294 + +0.5 5,660,295 - +0.5 5,660,295 - +0.5 5,660,295 - +0.8 5,660,338 - -0.9 5,660,382 + -0.9 5,660,383 - -1.5 5,660,404 + +1.5 5,660,405 - -2.1 5,660,405 - -1.5 5,660,520 + +2.1 5,660,520 + +0.4 5,660,520 + -1.6 5,660,536 + +0.6 5,660,536 + +3.1 5,660,537 - -1.2 5,660,560 - PP_4968 0.11 +1.1 5,660,779 - PP_4968 0.24 +2.2 5,660,824 + PP_4968 0.26 +1.3 5,660,824 + PP_4968 0.26 +0.1 5,660,824 + PP_4968 0.26 -1.5 5,660,824 + PP_4968 0.26 +1.2 5,660,919 + PP_4968 0.32 -1.6 5,660,919 + PP_4968 0.32 +2.5 5,660,920 - PP_4968 0.32 +0.7 5,660,920 - PP_4968 0.32 +0.8 5,661,127 - PP_4968 0.44 +0.5
Or see this region's nucleotide sequence