Strain Fitness in Pseudomonas putida KT2440 around PP_3719

Experiment: carbon source 2-Deoxy-D-glucose 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3718 and PP_3719 are separated by 34 nucleotidesPP_3719 and PP_3720 are separated by 193 nucleotidesPP_3720 and PP_3721 are separated by 92 nucleotides PP_3718: PP_3718 - putative aminotransferase, at 4,240,286 to 4,241,698 _3718 PP_3719: PP_3719 - Putrescine-binding periplasmic protein, at 4,241,733 to 4,242,836 _3719 PP_3720: PP_3720 - putative NAD(P)H quinone oxidoreductase, at 4,243,030 to 4,243,737 _3720 PP_3721: PP_3721 - arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data), at 4,243,830 to 4,245,020 _3721 Position (kb) 4241 4242 4243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4240.798 kb on - strand, within PP_3718at 4240.798 kb on - strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.926 kb on + strand, within PP_3718at 4240.927 kb on - strand, within PP_3718at 4240.959 kb on + strand, within PP_3718at 4240.959 kb on + strandat 4240.959 kb on + strand, within PP_3718at 4241.116 kb on - strand, within PP_3718at 4241.157 kb on + strand, within PP_3718at 4241.158 kb on - strand, within PP_3718at 4241.235 kb on + strand, within PP_3718at 4241.236 kb on - strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.283 kb on + strand, within PP_3718at 4241.284 kb on - strand, within PP_3718at 4241.286 kb on + strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.457 kb on - strand, within PP_3718at 4241.556 kb on + strand, within PP_3718at 4241.620 kb on - strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.631 kb on + strandat 4241.632 kb on - strandat 4241.632 kb on - strandat 4241.839 kb on + strandat 4241.839 kb on + strandat 4241.840 kb on - strandat 4241.840 kb on - strandat 4241.914 kb on + strand, within PP_3719at 4241.914 kb on + strand, within PP_3719at 4241.915 kb on - strand, within PP_3719at 4242.004 kb on + strand, within PP_3719at 4242.004 kb on + strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.005 kb on - strand, within PP_3719at 4242.104 kb on - strand, within PP_3719at 4242.160 kb on + strand, within PP_3719at 4242.160 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strandat 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.183 kb on + strand, within PP_3719at 4242.184 kb on - strand, within PP_3719at 4242.184 kb on - strand, within PP_3719at 4242.187 kb on + strand, within PP_3719at 4242.187 kb on + strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.188 kb on - strand, within PP_3719at 4242.265 kb on + strand, within PP_3719at 4242.266 kb on - strand, within PP_3719at 4242.415 kb on + strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.416 kb on - strand, within PP_3719at 4242.442 kb on + strand, within PP_3719at 4242.442 kb on + strand, within PP_3719at 4242.443 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.455 kb on - strand, within PP_3719at 4242.647 kb on - strand, within PP_3719at 4242.647 kb on - strand, within PP_3719at 4242.664 kb on + strand, within PP_3719at 4242.664 kb on + strand, within PP_3719at 4242.665 kb on - strand, within PP_3719at 4242.665 kb on - strand, within PP_3719at 4242.721 kb on + strand, within PP_3719at 4242.722 kb on - strand, within PP_3719at 4242.722 kb on - strand, within PP_3719at 4242.737 kb on - strandat 4242.745 kb on - strandat 4242.745 kb on - strandat 4242.753 kb on - strandat 4242.825 kb on + strandat 4242.825 kb on + strandat 4242.826 kb on - strandat 4242.826 kb on - strandat 4242.883 kb on + strandat 4242.911 kb on - strandat 4242.972 kb on + strandat 4242.973 kb on - strandat 4242.973 kb on - strandat 4243.018 kb on - strandat 4243.161 kb on - strand, within PP_3720at 4243.161 kb on - strand, within PP_3720at 4243.208 kb on + strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.209 kb on - strand, within PP_3720at 4243.346 kb on + strand, within PP_3720at 4243.364 kb on + strand, within PP_3720at 4243.365 kb on - strand, within PP_3720at 4243.541 kb on + strand, within PP_3720at 4243.542 kb on - strand, within PP_3720at 4243.550 kb on + strand, within PP_3720at 4243.551 kb on - strand, within PP_3720at 4243.572 kb on + strand, within PP_3720at 4243.613 kb on + strand, within PP_3720at 4243.613 kb on + strand, within PP_3720at 4243.613 kb on + strand, within PP_3720at 4243.613 kb on + strand, within PP_3720at 4243.613 kb on + strand, within PP_3720at 4243.614 kb on - strand, within PP_3720at 4243.614 kb on - strand, within PP_3720at 4243.614 kb on - strand, within PP_3720at 4243.614 kb on - strand, within PP_3720at 4243.724 kb on - strandat 4243.724 kb on - strandat 4243.759 kb on - strandat 4243.759 kb on - strandat 4243.813 kb on + strandat 4243.814 kb on - strandat 4243.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source 2-Deoxy-D-glucose 50 mM
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4,240,798 - PP_3718 0.36 -1.1
4,240,798 - PP_3718 0.36 -0.8
4,240,926 + PP_3718 0.45 -0.3
4,240,926 + PP_3718 0.45 +1.9
4,240,927 - PP_3718 0.45 +2.3
4,240,959 + PP_3718 0.48 -0.1
4,240,959 + +0.7
4,240,959 + PP_3718 0.48 +2.0
4,241,116 - PP_3718 0.59 -1.1
4,241,157 + PP_3718 0.62 -1.1
4,241,158 - PP_3718 0.62 -0.8
4,241,235 + PP_3718 0.67 +1.1
4,241,236 - PP_3718 0.67 -0.7
4,241,283 + PP_3718 0.71 -2.0
4,241,283 + PP_3718 0.71 -0.5
4,241,283 + PP_3718 0.71 -1.3
4,241,284 - PP_3718 0.71 -1.9
4,241,286 + PP_3718 0.71 +0.4
4,241,457 - PP_3718 0.83 -1.3
4,241,457 - PP_3718 0.83 -2.7
4,241,457 - PP_3718 0.83 +3.0
4,241,556 + PP_3718 0.90 -0.9
4,241,620 - +2.7
4,241,631 + +0.7
4,241,631 + +0.7
4,241,631 + +0.2
4,241,631 + -1.0
4,241,631 + -0.7
4,241,631 + -1.4
4,241,632 - +0.2
4,241,632 - +1.4
4,241,839 + -0.9
4,241,839 + -1.9
4,241,840 - +0.3
4,241,840 - +0.7
4,241,914 + PP_3719 0.16 -0.1
4,241,914 + PP_3719 0.16 -0.4
4,241,915 - PP_3719 0.16 +1.0
4,242,004 + PP_3719 0.25 +1.7
4,242,004 + PP_3719 0.25 -0.2
4,242,005 - PP_3719 0.25 -1.5
4,242,005 - PP_3719 0.25 +0.2
4,242,005 - PP_3719 0.25 -2.1
4,242,005 - PP_3719 0.25 -0.7
4,242,104 - PP_3719 0.34 +0.5
4,242,160 + PP_3719 0.39 +1.6
4,242,160 + PP_3719 0.39 +2.2
4,242,183 + PP_3719 0.41 +1.1
4,242,183 + +0.7
4,242,183 + PP_3719 0.41 -0.3
4,242,183 + PP_3719 0.41 +2.3
4,242,183 + PP_3719 0.41 +1.1
4,242,183 + PP_3719 0.41 +0.6
4,242,184 - PP_3719 0.41 +0.2
4,242,184 - PP_3719 0.41 -0.8
4,242,187 + PP_3719 0.41 +1.2
4,242,187 + PP_3719 0.41 -0.3
4,242,188 - PP_3719 0.41 -0.3
4,242,188 - PP_3719 0.41 -0.6
4,242,188 - PP_3719 0.41 +0.8
4,242,188 - PP_3719 0.41 -1.7
4,242,188 - PP_3719 0.41 +0.1
4,242,188 - PP_3719 0.41 -0.7
4,242,188 - PP_3719 0.41 +3.3
4,242,188 - PP_3719 0.41 -0.2
4,242,188 - PP_3719 0.41 -0.6
4,242,188 - PP_3719 0.41 +1.1
4,242,265 + PP_3719 0.48 +1.0
4,242,266 - PP_3719 0.48 +0.5
4,242,415 + PP_3719 0.62 -0.1
4,242,416 - PP_3719 0.62 -0.3
4,242,416 - PP_3719 0.62 -0.9
4,242,416 - PP_3719 0.62 -1.2
4,242,416 - PP_3719 0.62 -0.9
4,242,442 + PP_3719 0.64 +1.2
4,242,442 + PP_3719 0.64 -0.1
4,242,443 - PP_3719 0.64 -2.2
4,242,455 - PP_3719 0.65 +2.7
4,242,455 - PP_3719 0.65 -0.7
4,242,455 - PP_3719 0.65 +1.7
4,242,647 - PP_3719 0.83 -1.3
4,242,647 - PP_3719 0.83 +1.4
4,242,664 + PP_3719 0.84 +3.0
4,242,664 + PP_3719 0.84 -1.0
4,242,665 - PP_3719 0.84 +3.3
4,242,665 - PP_3719 0.84 +0.1
4,242,721 + PP_3719 0.89 -0.5
4,242,722 - PP_3719 0.90 +1.4
4,242,722 - PP_3719 0.90 -0.6
4,242,737 - +0.2
4,242,745 - +0.7
4,242,745 - +1.2
4,242,753 - -0.7
4,242,825 + -0.0
4,242,825 + -0.6
4,242,826 - -1.4
4,242,826 - -0.2
4,242,883 + -2.3
4,242,911 - -0.0
4,242,972 + -0.5
4,242,973 - -0.0
4,242,973 - -0.1
4,243,018 - -3.5
4,243,161 - PP_3720 0.19 +2.3
4,243,161 - PP_3720 0.19 -1.3
4,243,208 + PP_3720 0.25 +2.0
4,243,209 - PP_3720 0.25 +0.3
4,243,209 - PP_3720 0.25 +3.0
4,243,209 - PP_3720 0.25 +1.7
4,243,209 - PP_3720 0.25 +3.0
4,243,209 - PP_3720 0.25 -0.6
4,243,209 - PP_3720 0.25 +0.1
4,243,346 + PP_3720 0.45 -0.3
4,243,364 + PP_3720 0.47 +0.6
4,243,365 - PP_3720 0.47 -0.8
4,243,541 + PP_3720 0.72 +0.0
4,243,542 - PP_3720 0.72 -2.0
4,243,550 + PP_3720 0.73 +0.6
4,243,551 - PP_3720 0.74 +0.1
4,243,572 + PP_3720 0.77 +1.0
4,243,613 + PP_3720 0.82 -0.6
4,243,613 + PP_3720 0.82 -0.2
4,243,613 + PP_3720 0.82 -1.9
4,243,613 + PP_3720 0.82 +1.7
4,243,613 + PP_3720 0.82 -1.5
4,243,614 - PP_3720 0.82 -1.4
4,243,614 - PP_3720 0.82 +0.7
4,243,614 - PP_3720 0.82 -0.0
4,243,614 - PP_3720 0.82 +2.3
4,243,724 - +1.6
4,243,724 - -0.9
4,243,759 - -1.2
4,243,759 - -2.9
4,243,813 + -0.2
4,243,814 - -0.7
4,243,814 - -0.2

Or see this region's nucleotide sequence