Experiment: carbon source 2-Deoxy-D-glucose 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0506 and PP_0507 overlap by 1 nucleotides PP_0507 and PP_0508 are separated by 0 nucleotides PP_0508 and PP_0509 are separated by 130 nucleotides
PP_0506: PP_0506 - putative ABC efflux transporter, permease protein, at 594,888 to 596,153
_0506
PP_0507: PP_0507 - putative ABC efflux transporter, ATP-binding protein, at 596,153 to 596,863
_0507
PP_0508: PP_0508 - conserved exported protein of unknown function, at 596,864 to 597,445
_0508
PP_0509: PP_0509 - conserved protein of unknown function, at 597,576 to 597,920
_0509
Position (kb) 596
597 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 595.264 kb on - strand, within PP_0506 at 595.335 kb on + strand, within PP_0506 at 595.335 kb on + strand, within PP_0506 at 595.336 kb on - strand, within PP_0506 at 595.336 kb on - strand, within PP_0506 at 595.501 kb on - strand, within PP_0506 at 595.551 kb on - strand, within PP_0506 at 595.590 kb on + strand, within PP_0506 at 595.605 kb on - strand, within PP_0506 at 595.681 kb on + strand, within PP_0506 at 595.681 kb on + strand, within PP_0506 at 595.681 kb on + strand, within PP_0506 at 595.682 kb on - strand, within PP_0506 at 595.781 kb on - strand, within PP_0506 at 595.781 kb on - strand, within PP_0506 at 595.781 kb on - strand, within PP_0506 at 595.786 kb on + strand, within PP_0506 at 595.786 kb on + strand, within PP_0506 at 595.888 kb on + strand, within PP_0506 at 595.888 kb on + strand, within PP_0506 at 595.889 kb on - strand, within PP_0506 at 595.889 kb on - strand, within PP_0506 at 595.889 kb on - strand, within PP_0506 at 595.916 kb on + strand, within PP_0506 at 595.916 kb on + strand, within PP_0506 at 595.917 kb on - strand, within PP_0506 at 595.948 kb on + strand, within PP_0506 at 595.948 kb on + strand, within PP_0506 at 595.949 kb on - strand, within PP_0506 at 596.150 kb on - strand at 596.562 kb on - strand, within PP_0507 at 596.599 kb on + strand, within PP_0507 at 596.599 kb on + strand, within PP_0507 at 596.600 kb on - strand, within PP_0507 at 596.600 kb on - strand, within PP_0507 at 596.600 kb on - strand, within PP_0507 at 596.600 kb on - strand, within PP_0507 at 596.600 kb on - strand, within PP_0507 at 596.601 kb on + strand, within PP_0507 at 596.601 kb on + strand, within PP_0507 at 596.601 kb on + strand, within PP_0507 at 596.601 kb on + strand, within PP_0507 at 596.602 kb on - strand, within PP_0507 at 596.602 kb on - strand, within PP_0507 at 597.024 kb on + strand, within PP_0508 at 597.025 kb on - strand, within PP_0508 at 597.025 kb on - strand, within PP_0508 at 597.295 kb on + strand, within PP_0508 at 597.327 kb on - strand, within PP_0508 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.679 kb on + strand, within PP_0509
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source 2-Deoxy-D-glucose 50 mM remove 595,264 - PP_0506 0.30 -2.8 595,335 + PP_0506 0.35 -3.0 595,335 + PP_0506 0.35 -0.2 595,336 - PP_0506 0.35 +0.5 595,336 - PP_0506 0.35 -3.4 595,501 - PP_0506 0.48 -3.3 595,551 - PP_0506 0.52 -1.7 595,590 + PP_0506 0.55 -2.3 595,605 - PP_0506 0.57 -4.1 595,681 + PP_0506 0.63 -1.8 595,681 + PP_0506 0.63 -2.4 595,681 + PP_0506 0.63 -1.8 595,682 - PP_0506 0.63 -1.1 595,781 - PP_0506 0.71 -1.6 595,781 - PP_0506 0.71 -2.7 595,781 - PP_0506 0.71 -1.1 595,786 + PP_0506 0.71 -2.3 595,786 + PP_0506 0.71 -2.1 595,888 + PP_0506 0.79 +0.5 595,888 + PP_0506 0.79 +0.7 595,889 - PP_0506 0.79 -1.9 595,889 - PP_0506 0.79 +0.5 595,889 - PP_0506 0.79 +0.3 595,916 + PP_0506 0.81 +0.5 595,916 + PP_0506 0.81 -2.8 595,917 - PP_0506 0.81 -2.5 595,948 + PP_0506 0.84 +1.5 595,948 + PP_0506 0.84 +0.5 595,949 - PP_0506 0.84 -2.2 596,150 - -0.5 596,562 - PP_0507 0.58 -1.0 596,599 + PP_0507 0.63 -1.5 596,599 + PP_0507 0.63 +0.1 596,600 - PP_0507 0.63 -1.7 596,600 - PP_0507 0.63 +1.5 596,600 - PP_0507 0.63 -1.4 596,600 - PP_0507 0.63 -2.0 596,600 - PP_0507 0.63 -0.5 596,601 + PP_0507 0.63 -1.4 596,601 + PP_0507 0.63 -1.0 596,601 + PP_0507 0.63 +1.5 596,601 + PP_0507 0.63 +0.5 596,602 - PP_0507 0.63 -2.1 596,602 - PP_0507 0.63 -1.3 597,024 + PP_0508 0.27 -0.6 597,025 - PP_0508 0.28 -0.7 597,025 - PP_0508 0.28 +0.5 597,295 + PP_0508 0.74 -0.8 597,327 - PP_0508 0.80 -1.1 597,630 - PP_0509 0.16 -0.2 597,630 - PP_0509 0.16 +0.1 597,630 - PP_0509 0.16 +2.1 597,630 - PP_0509 0.16 +0.3 597,679 + PP_0509 0.30 +0.9
Or see this region's nucleotide sequence