Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3303 and Atu8186 are separated by 24 nucleotides Atu8186 and Atu3307 are separated by 92 nucleotides
Atu3303: Atu3303 - cellulose synthesis protein, at 331,201 to 332,355
Atu3303
Atu8186: Atu8186 - cellulose synthesis protein, at 332,380 to 334,626
Atu8186
Atu3307: Atu3307 - endoglucanase, at 334,719 to 335,774
Atu3307
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -1
0
1
2 at 331.385 kb on - strand, within Atu3303 at 331.413 kb on - strand, within Atu3303 at 331.475 kb on - strand, within Atu3303 at 331.565 kb on - strand, within Atu3303 at 331.592 kb on - strand, within Atu3303 at 331.624 kb on + strand, within Atu3303 at 331.714 kb on + strand, within Atu3303 at 331.785 kb on - strand, within Atu3303 at 331.803 kb on - strand, within Atu3303 at 331.855 kb on + strand, within Atu3303 at 331.899 kb on + strand, within Atu3303 at 331.901 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.965 kb on + strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 331.973 kb on - strand, within Atu3303 at 332.028 kb on + strand, within Atu3303 at 332.086 kb on - strand, within Atu3303 at 332.221 kb on + strand, within Atu3303 at 332.397 kb on - strand at 332.436 kb on + strand at 332.463 kb on + strand at 332.617 kb on + strand, within Atu8186 at 332.748 kb on - strand, within Atu8186 at 333.020 kb on + strand, within Atu8186 at 333.067 kb on + strand, within Atu8186 at 333.110 kb on - strand, within Atu8186 at 333.259 kb on + strand, within Atu8186 at 333.267 kb on - strand, within Atu8186 at 333.320 kb on - strand, within Atu8186 at 333.518 kb on - strand, within Atu8186 at 333.562 kb on + strand, within Atu8186 at 333.570 kb on - strand, within Atu8186 at 333.637 kb on + strand, within Atu8186 at 333.741 kb on + strand, within Atu8186 at 333.845 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.877 kb on + strand, within Atu8186 at 333.885 kb on - strand, within Atu8186 at 333.950 kb on + strand, within Atu8186 at 334.015 kb on + strand, within Atu8186 at 334.038 kb on + strand, within Atu8186 at 334.053 kb on - strand, within Atu8186 at 334.079 kb on + strand, within Atu8186 at 334.104 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.208 kb on + strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.216 kb on - strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.347 kb on + strand, within Atu8186 at 334.412 kb on + strand at 334.490 kb on - strand at 334.508 kb on - strand at 334.690 kb on + strand at 334.708 kb on - strand at 334.712 kb on + strand at 334.876 kb on + strand, within Atu3307 at 334.916 kb on - strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.078 kb on + strand, within Atu3307 at 335.122 kb on + strand, within Atu3307 at 335.140 kb on - strand, within Atu3307 at 335.353 kb on + strand, within Atu3307 at 335.416 kb on - strand, within Atu3307 at 335.470 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.583 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307 at 335.588 kb on - strand, within Atu3307
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 331,385 - Atu3303 0.16 +0.1 331,413 - Atu3303 0.18 +0.3 331,475 - Atu3303 0.24 +1.3 331,565 - Atu3303 0.32 +0.0 331,592 - Atu3303 0.34 -0.1 331,624 + Atu3303 0.37 +0.0 331,714 + Atu3303 0.44 -0.5 331,785 - Atu3303 0.51 +0.2 331,803 - Atu3303 0.52 -0.4 331,855 + Atu3303 0.57 -0.8 331,899 + Atu3303 0.60 -0.4 331,901 + Atu3303 0.61 +0.5 331,965 + Atu3303 0.66 +0.1 331,965 + Atu3303 0.66 +0.2 331,973 - Atu3303 0.67 -0.0 331,973 - Atu3303 0.67 +0.2 332,028 + Atu3303 0.72 +0.1 332,086 - Atu3303 0.77 -0.6 332,221 + Atu3303 0.88 -1.1 332,397 - +0.3 332,436 + +0.2 332,463 + +0.1 332,617 + Atu8186 0.11 +0.4 332,748 - Atu8186 0.16 +0.9 333,020 + Atu8186 0.28 +1.3 333,067 + Atu8186 0.31 +1.2 333,110 - Atu8186 0.32 +0.1 333,259 + Atu8186 0.39 -0.1 333,267 - Atu8186 0.39 +0.2 333,320 - Atu8186 0.42 +0.2 333,518 - Atu8186 0.51 -0.0 333,562 + Atu8186 0.53 -0.0 333,570 - Atu8186 0.53 +1.0 333,637 + Atu8186 0.56 -0.1 333,741 + Atu8186 0.61 +0.2 333,845 + Atu8186 0.65 +0.1 333,877 + Atu8186 0.67 +0.4 333,877 + Atu8186 0.67 +0.3 333,885 - Atu8186 0.67 +0.1 333,950 + Atu8186 0.70 +0.8 334,015 + Atu8186 0.73 -0.6 334,038 + Atu8186 0.74 +1.4 334,053 - Atu8186 0.74 +1.8 334,079 + Atu8186 0.76 -0.3 334,104 + Atu8186 0.77 -0.1 334,208 + Atu8186 0.81 -0.1 334,208 + Atu8186 0.81 +0.2 334,208 + Atu8186 0.81 -0.4 334,216 - Atu8186 0.82 -0.5 334,216 - Atu8186 0.82 -0.1 334,347 + Atu8186 0.88 -0.1 334,347 + Atu8186 0.88 -0.1 334,412 + +0.2 334,490 - +0.4 334,508 - +0.1 334,690 + +0.8 334,708 - +0.3 334,712 + +0.1 334,876 + Atu3307 0.15 +0.2 334,916 - Atu3307 0.19 +0.7 335,078 + Atu3307 0.34 -0.1 335,078 + Atu3307 0.34 -0.4 335,122 + Atu3307 0.38 +0.5 335,140 - Atu3307 0.40 -0.6 335,353 + Atu3307 0.60 +0.1 335,416 - Atu3307 0.66 +0.1 335,470 - Atu3307 0.71 +0.1 335,583 - Atu3307 0.82 -0.1 335,583 - Atu3307 0.82 -1.0 335,588 - Atu3307 0.82 -0.8 335,588 - Atu3307 0.82 +0.1 335,588 - Atu3307 0.82 +1.0
Or see this region's nucleotide sequence