Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5533 and Atu5534 are separated by 1 nucleotides Atu5534 and Atu5535 overlap by 1 nucleotides Atu5535 and Atu5536 are separated by 37 nucleotides
Atu5533: Atu5533 - ABC transporter membrane spanning protein, at 527,283 to 528,422
Atu5533
Atu5534: Atu5534 - ABC transporter nucleotide binding/ATPase, at 528,424 to 529,173
Atu5534
Atu5535: Atu5535 - ABC transporter nucleotide binding/ATPase, at 529,173 to 529,868
Atu5535
Atu5536: Atu5536 - amidohydrolase, at 529,906 to 531,645
Atu5536
Position (kb) 529
530 Strain fitness (log2 ratio) -1
0
1
2 at 528.210 kb on + strand, within Atu5533 at 528.210 kb on + strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.218 kb on - strand, within Atu5533 at 528.237 kb on - strand, within Atu5533 at 528.263 kb on + strand, within Atu5533 at 528.345 kb on - strand at 528.368 kb on + strand at 528.531 kb on + strand, within Atu5534 at 528.600 kb on + strand, within Atu5534 at 528.608 kb on - strand, within Atu5534 at 528.722 kb on + strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.754 kb on - strand, within Atu5534 at 528.819 kb on - strand, within Atu5534 at 528.874 kb on - strand, within Atu5534 at 528.884 kb on + strand, within Atu5534 at 528.902 kb on - strand, within Atu5534 at 528.939 kb on + strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.977 kb on - strand, within Atu5534 at 528.979 kb on + strand, within Atu5534 at 528.987 kb on - strand, within Atu5534 at 529.018 kb on - strand, within Atu5534 at 529.043 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.098 kb on - strand, within Atu5534 at 529.117 kb on + strand at 529.125 kb on - strand at 529.156 kb on - strand at 529.204 kb on - strand at 529.204 kb on - strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.228 kb on + strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.236 kb on - strand at 529.301 kb on + strand, within Atu5535 at 529.301 kb on + strand, within Atu5535 at 529.309 kb on + strand, within Atu5535 at 529.364 kb on - strand, within Atu5535 at 529.397 kb on + strand, within Atu5535 at 529.401 kb on + strand, within Atu5535 at 529.416 kb on + strand, within Atu5535 at 529.421 kb on + strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.424 kb on - strand, within Atu5535 at 529.429 kb on - strand, within Atu5535 at 529.474 kb on + strand, within Atu5535 at 529.546 kb on + strand, within Atu5535 at 529.556 kb on + strand, within Atu5535 at 529.607 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.622 kb on + strand, within Atu5535 at 529.657 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.672 kb on - strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.768 kb on + strand, within Atu5535 at 529.842 kb on - strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.853 kb on + strand at 529.854 kb on + strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.861 kb on - strand at 529.872 kb on - strand at 529.920 kb on + strand at 529.928 kb on - strand at 529.942 kb on - strand at 530.026 kb on + strand at 530.036 kb on - strand at 530.059 kb on + strand at 530.093 kb on - strand, within Atu5536 at 530.108 kb on + strand, within Atu5536 at 530.167 kb on - strand, within Atu5536 at 530.226 kb on + strand, within Atu5536 at 530.289 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.373 kb on - strand, within Atu5536 at 530.403 kb on + strand, within Atu5536 at 530.408 kb on + strand, within Atu5536 at 530.446 kb on - strand, within Atu5536 at 530.446 kb on - strand, within Atu5536 at 530.516 kb on + strand, within Atu5536 at 530.522 kb on - strand, within Atu5536 at 530.526 kb on + strand, within Atu5536 at 530.651 kb on + strand, within Atu5536 at 530.656 kb on + strand, within Atu5536 at 530.664 kb on - strand, within Atu5536 at 530.773 kb on - strand, within Atu5536 at 530.794 kb on - strand, within Atu5536 at 530.806 kb on - strand, within Atu5536 at 530.837 kb on + strand, within Atu5536 at 530.864 kb on - strand, within Atu5536
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 528,210 + Atu5533 0.81 +0.1 528,210 + Atu5533 0.81 -0.0 528,218 - Atu5533 0.82 -0.0 528,218 - Atu5533 0.82 +0.7 528,237 - Atu5533 0.84 +0.6 528,263 + Atu5533 0.86 +0.1 528,345 - -0.2 528,368 + -0.2 528,531 + Atu5534 0.14 +0.2 528,600 + Atu5534 0.23 +0.2 528,608 - Atu5534 0.25 +0.4 528,722 + Atu5534 0.40 -0.2 528,754 - Atu5534 0.44 -0.1 528,754 - Atu5534 0.44 +0.3 528,819 - Atu5534 0.53 +0.6 528,874 - Atu5534 0.60 +0.4 528,884 + Atu5534 0.61 -0.4 528,902 - Atu5534 0.64 +0.1 528,939 + Atu5534 0.69 -0.7 528,977 - Atu5534 0.74 -0.3 528,977 - Atu5534 0.74 +0.1 528,979 + Atu5534 0.74 -0.3 528,987 - Atu5534 0.75 +0.5 529,018 - Atu5534 0.79 -0.0 529,043 - Atu5534 0.83 +0.6 529,098 - Atu5534 0.90 +0.6 529,098 - Atu5534 0.90 -0.1 529,117 + +0.4 529,125 - -0.1 529,156 - +0.3 529,204 - +0.2 529,204 - +0.0 529,228 + +0.2 529,228 + -0.3 529,228 + -1.0 529,236 - -0.5 529,236 - -0.1 529,236 - +0.0 529,301 + Atu5535 0.18 +0.1 529,301 + Atu5535 0.18 -0.4 529,309 + Atu5535 0.20 -0.1 529,364 - Atu5535 0.27 -0.0 529,397 + Atu5535 0.32 -0.6 529,401 + Atu5535 0.33 +0.5 529,416 + Atu5535 0.35 +0.2 529,421 + Atu5535 0.36 +0.4 529,424 - Atu5535 0.36 +0.3 529,424 - Atu5535 0.36 -0.0 529,429 - Atu5535 0.37 +0.3 529,474 + Atu5535 0.43 -0.1 529,546 + Atu5535 0.54 +1.3 529,556 + Atu5535 0.55 +0.1 529,607 + Atu5535 0.62 +1.0 529,622 + Atu5535 0.65 +0.3 529,622 + Atu5535 0.65 +0.4 529,657 - Atu5535 0.70 +0.7 529,672 - Atu5535 0.72 -0.1 529,672 - Atu5535 0.72 +0.5 529,768 + Atu5535 0.85 -0.1 529,768 + Atu5535 0.85 +1.3 529,842 - -0.9 529,853 + +0.2 529,853 + +0.1 529,853 + -0.2 529,854 + +0.1 529,861 - -0.2 529,861 - -0.3 529,861 - -0.1 529,872 - +0.2 529,920 + -0.4 529,928 - +0.2 529,942 - -0.1 530,026 + -0.1 530,036 - +0.3 530,059 + -0.4 530,093 - Atu5536 0.11 -0.5 530,108 + Atu5536 0.12 +0.3 530,167 - Atu5536 0.15 -0.1 530,226 + Atu5536 0.18 +0.0 530,289 - Atu5536 0.22 +0.2 530,373 - Atu5536 0.27 +0.3 530,373 - Atu5536 0.27 +0.2 530,373 - Atu5536 0.27 +0.2 530,373 - Atu5536 0.27 +0.0 530,373 - Atu5536 0.27 -0.6 530,373 - Atu5536 0.27 -0.0 530,373 - Atu5536 0.27 -0.0 530,403 + Atu5536 0.29 +2.1 530,408 + Atu5536 0.29 +0.0 530,446 - Atu5536 0.31 -0.2 530,446 - Atu5536 0.31 -0.4 530,516 + Atu5536 0.35 -0.1 530,522 - Atu5536 0.35 +1.0 530,526 + Atu5536 0.36 +0.0 530,651 + Atu5536 0.43 -0.2 530,656 + Atu5536 0.43 +0.4 530,664 - Atu5536 0.44 +0.1 530,773 - Atu5536 0.50 -0.1 530,794 - Atu5536 0.51 -0.3 530,806 - Atu5536 0.52 -0.3 530,837 + Atu5536 0.54 +0.4 530,864 - Atu5536 0.55 -0.0
Or see this region's nucleotide sequence