Experiment: Indole-3-pyruvic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5167 and Atu5168 are separated by 35 nucleotides Atu5168 and Atu5169 are separated by 3 nucleotides Atu5169 and Atu5170 overlap by 1 nucleotides Atu5170 and Atu5171 are separated by 14 nucleotides
Atu5167: Atu5167 - type IV secretion protein AvhB6, at 165,141 to 166,076
Atu5167
Atu5168: Atu5168 - type IV secretion protein AvhB7, at 166,112 to 166,378
Atu5168
Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053
Atu5169
Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904
Atu5170
Atu5171: Atu5171 - type IV secretion protein AvhB10, at 167,919 to 169,091
Atu5171
Position (kb) 167
168 Strain fitness (log2 ratio) -1
0
1 at 166.114 kb on + strand at 166.179 kb on - strand, within Atu5168 at 166.438 kb on + strand at 166.446 kb on - strand at 166.455 kb on - strand, within Atu5169 at 166.501 kb on - strand, within Atu5169 at 166.514 kb on + strand, within Atu5169 at 166.554 kb on - strand, within Atu5169 at 166.555 kb on + strand, within Atu5169 at 166.691 kb on + strand, within Atu5169 at 166.704 kb on - strand, within Atu5169 at 166.782 kb on - strand, within Atu5169 at 166.832 kb on + strand, within Atu5169 at 166.983 kb on - strand, within Atu5169 at 167.041 kb on - strand at 167.041 kb on - strand at 167.144 kb on + strand, within Atu5170 at 167.178 kb on - strand, within Atu5170 at 167.371 kb on - strand, within Atu5170 at 167.425 kb on + strand, within Atu5170 at 167.449 kb on + strand, within Atu5170 at 167.472 kb on - strand, within Atu5170 at 167.637 kb on + strand, within Atu5170 at 167.692 kb on - strand, within Atu5170 at 167.784 kb on + strand, within Atu5170 at 167.799 kb on - strand, within Atu5170 at 167.823 kb on - strand at 167.944 kb on + strand at 168.020 kb on - strand at 168.089 kb on + strand, within Atu5171 at 168.276 kb on - strand, within Atu5171 at 168.308 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.613 kb on - strand, within Atu5171 at 168.696 kb on - strand, within Atu5171 at 168.741 kb on + strand, within Atu5171 at 168.882 kb on - strand, within Atu5171 at 168.892 kb on - strand, within Atu5171
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM remove 166,114 + +0.3 166,179 - Atu5168 0.25 -0.2 166,438 + -0.4 166,446 - -1.2 166,455 - Atu5169 0.11 +0.6 166,501 - Atu5169 0.18 +1.0 166,514 + Atu5169 0.20 +0.1 166,554 - Atu5169 0.26 -0.5 166,555 + Atu5169 0.26 -0.3 166,691 + Atu5169 0.46 +0.4 166,704 - Atu5169 0.48 +1.4 166,782 - Atu5169 0.60 +1.0 166,832 + Atu5169 0.67 -0.1 166,983 - Atu5169 0.89 +1.3 167,041 - +0.3 167,041 - +0.1 167,144 + Atu5170 0.11 -0.4 167,178 - Atu5170 0.15 +0.6 167,371 - Atu5170 0.37 +1.5 167,425 + Atu5170 0.44 +0.3 167,449 + Atu5170 0.46 -0.1 167,472 - Atu5170 0.49 -0.0 167,637 + Atu5170 0.69 +0.3 167,692 - Atu5170 0.75 -0.4 167,784 + Atu5170 0.86 +0.3 167,799 - Atu5170 0.88 +0.8 167,823 - -0.7 167,944 + +0.8 168,020 - +0.3 168,089 + Atu5171 0.14 +0.2 168,276 - Atu5171 0.30 -0.3 168,308 - Atu5171 0.33 -0.4 168,318 - Atu5171 0.34 +0.4 168,318 - Atu5171 0.34 -0.4 168,613 - Atu5171 0.59 -0.1 168,696 - Atu5171 0.66 -0.0 168,741 + Atu5171 0.70 +0.1 168,882 - Atu5171 0.82 +0.2 168,892 - Atu5171 0.83 -0.7
Or see this region's nucleotide sequence