Strain Fitness in Agrobacterium fabrum C58 around Atu4441

Experiment: Indole-3-pyruvic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM
1,585,338	-				+0.1
1,585,689	+		Atu4441	0.33	-0.0
1,585,805	+		Atu4441	0.42	+0.4
1,585,831	+		Atu4441	0.43	+0.1
1,585,831	+		Atu4441	0.43	+0.7
1,585,907	+		Atu4441	0.49	+0.2
1,586,031	+		Atu4441	0.58	-0.0
1,586,031	+		Atu4441	0.58	+1.0
1,586,039	-		Atu4441	0.58	+1.4
1,586,111	+		Atu4441	0.64	-0.0
1,586,119	-		Atu4441	0.64	-0.0
1,586,136	+		Atu4441	0.65	+0.9
1,586,144	-		Atu4441	0.66	+0.6
1,586,286	+		Atu4441	0.76	-0.5
1,586,364	-		Atu4441	0.82	+0.2
1,586,383	-		Atu4441	0.83	+0.7
1,586,410	-		Atu4441	0.85	-0.1
1,586,432	-		Atu4441	0.86	+1.4
1,586,603	-				+0.4
1,586,717	-				-1.6
1,586,758	+				+0.2
1,586,788	-				+0.5
1,586,802	+		Atu4442	0.12	-0.4
1,586,808	-		Atu4442	0.13	-0.1
1,586,808	-		Atu4442	0.13	+0.0
1,586,840	+		Atu4442	0.19	+0.2
1,586,877	-		Atu4442	0.26	-1.3
1,586,944	-		Atu4442	0.38	+0.2
1,586,990	+		Atu4442	0.46	-0.1
1,587,067	+		Atu4442	0.60	-0.2
1,587,109	+		Atu4442	0.68	-0.1
1,587,197	+		Atu4442	0.84	+1.2
1,587,379	+				-0.2
1,587,388	-				+0.0
1,587,398	+		Atu4443	0.12	+0.0
1,587,406	-		Atu4443	0.15	-0.1
1,587,416	+		Atu4443	0.17	-0.4
1,587,416	+		Atu4443	0.17	-0.3
1,587,493	+		Atu4443	0.39	-0.2
1,587,501	-		Atu4443	0.42	+0.4
1,587,582	+		Atu4443	0.65	-0.3